Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1478 ATGCTTCTGTCCTCAATACGCAGAAAATTCGCAAGGGGAGTGTGGCCCATTCGAACGCTCTCTTCAAACGCTGAAATGAAAGAGTTTTTGGATTACTTAGATTCGCTAAAAAATTTCGAGAAGTCAGGAGTGCCCAGAGCTGCCGGCACCGATTCAGACGAGGGTTTCGATCTGGGTAGAATGAGACGCCTCATGGAGCGTTTCGGTAATCCTCACACCAAGTTCAAGGCGGTTCATATTGCTGGGACTAAGGGAAAGGGATCAACAGCTGCGTTTATATCTAATATTCTGAGGACGGAAGGTTATTCTGTTGGTTGTTACACTAGTCCACATATCCTGACCATCAGGGAGCGTATTTTACTTGGAAGATCTGGCCATCCAGTGTCGGCAAAGTTGTTGAATGATCTCTTTCACAGGATCAAGCAGGAACTTGAGCAGGCAATGAAAGAGGAAAATGGTTGCATAAGCCACTTCGAGGTTTTCACCGCAATGGCATATATCTTATTTGCTGATGAGAATGTTGACATTGCTGTTATTGAGGCTGGGTTAGGGGGTGCACGAGATGCAACAAATATCATATCCAGCTCTGGACTTGCTGCAGCAGTCATAACTACTGTAGGTGAGGAACATTTGGCAGCTCTTGGGGGTTCTTTGGAAACAATTGCAATGGCAAAAGCAGGAATCATAAAACAAGGCTGCCCATTGGTGTTGGGTGGGCCATTTGTTCCTCATATTGAGCGCATTATTCGAGATAAAGCAGCAACCATGGAATCAACTGTTGTGTCAGCATATGATACTAGAAATAGGTTTACTGTGAAAAGTTGCAGCATACTCAATGGAAGGCCTTGTCAAATTTGTGATATAGTGATACAAGTTGGGCAAGACTTGAAGATGTCTTGTGAGTTACATGATGTGAAGTTGAAAATGCTTGGAGATCACCAACTTCAAAATGCAGCTACTGCAACTTGTGTGGCTCTTTGTCTTCGTAATTTAGGATGGAGTATTTCTGATGAATCTATTAGGTCTGGTTTAGAGCATACACACCTCCTTGGAAGGAGTCAATTTCTATCATCTGAAGAAGCAGAGGTATTAGGACTTACTGGAGCAACAGTATTACTTGATGGAGCTCATACCAAAGAATCCGCCAAAGCTCTGATGAATACAATCAAGACAGCATTTCCCAAGGCTCGATTGGTTTTTGTTGTTGCAATGGCAAGTGACAAAGACCATGTGGGTTTTGCTCAAGAGATTCTCTCAGGTGGGCATGTGGAGACTGTCCTTTTGACAGAAGCTGCTATTGCTGGAGGTGTAACTAGAACAACACCAGCATCTTTATTGAAAGATTCTTGGATTAAAGCTTCTGATGAGCTTGGCATTGAGATATTGCATGATGGAATGGCAGAATATGATGAATTAATAAATGAATCTGAGAGCAATTTGGGTGATGGTATGACCATATTGTCTACCGAGTCATCTTTAAAGAGTTGTTTGAGAACTGCAAATAAGATTCTAACCAGAAGAGGGGAAGAGGAGAAGGGTGTTATTGTCTTCACTGGATCTCTGCATATTGCAGCTTCTGTCTTAGCCTCTCTTGCTGGTTAA 1602 0.4276 MLLSSIRRKFARGVWPIRTLSSNAEMKEFLDYLDSLKNFEKSGVPRAAGTDSDEGFDLGRMRRLMERFGNPHTKFKAVHIAGTKGKGSTAAFISNILRTEGYSVGCYTSPHILTIRERILLGRSGHPVSAKLLNDLFHRIKQELEQAMKEENGCISHFEVFTAMAYILFADENVDIAVIEAGLGGARDATNIISSSGLAAAVITTVGEEHLAALGGSLETIAMAKAGIIKQGCPLVLGGPFVPHIERIIRDKAATMESTVVSAYDTRNRFTVKSCSILNGRPCQICDIVIQVGQDLKMSCELHDVKLKMLGDHQLQNAATATCVALCLRNLGWSISDESIRSGLEHTHLLGRSQFLSSEEAEVLGLTGATVLLDGAHTKESAKALMNTIKTAFPKARLVFVVAMASDKDHVGFAQEILSGGHVETVLLTEAAIAGGVTRTTPASLLKDSWIKASDELGIEILHDGMAEYDELINESESNLGDGMTILSTESSLKSCLRTANKILTRRGEEEKGVIVFTGSLHIAASVLASLAG* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1478 533 PANTHER DIHYDROFOLATE SYNTHETASE-RELATED 23 530 - -
Vra6g1478 533 Gene3D - 41 349 IPR036565 GO:0005524|GO:0009058
Vra6g1478 533 Coils Coil 130 150 - -
Vra6g1478 533 TIGRFAM folC: bifunctional protein FolC 58 529 IPR001645 GO:0004326|GO:0005524|GO:0009396
Vra6g1478 533 Pfam Mur ligase middle domain 80 325 IPR013221 GO:0005524|GO:0009058|GO:0016881
Vra6g1478 533 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 362 531 IPR036615 GO:0009058|GO:0016881
Vra6g1478 533 PANTHER FOLYLPOLYGLUTAMATE SYNTHASE-RELATED 23 530 IPR001645 GO:0004326|GO:0005524|GO:0009396
Vra6g1478 533 ProSitePatterns Folylpolyglutamate synthase signature 1. 78 101 IPR018109 GO:0004326|GO:0005524|GO:0009396
Vra6g1478 533 SUPERFAMILY MurD-like peptide ligases, catalytic domain 55 348 IPR036565 GO:0005524|GO:0009058
Vra6g1478 533 ProSitePatterns Folylpolyglutamate synthase signature 2. 178 193 IPR018109 GO:0004326|GO:0005524|GO:0009396
Vra6g1478 533 Gene3D - 351 532 IPR036615 GO:0009058|GO:0016881
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1478 Vra-Chr6 29300798 29316455 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1478 K20457 - gmx:100816933 887.486