Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1453 ATGGTGAATTCCATGGTCGAGCGTGCCACGAGCGACATGCTCATAGGGCCCGATTGGGCCATGAACATCGAGATCTGTGACATGCTCAATCATGATCCTGGGCAAGCAAAGGATGTTGTGAAAGGTATAAAGAAGAAGATTGGAAGTAAAAATTCAAAAGTTCAACTTCTTGCACTAACTTTGTTGGAGACAATCATAAAAAACTGTGGAGATATTGTTCATATGCATGTTGCAGAGAGAGACGTGCTTCATGATATGGTAAAAATAGTGAAGAAAAAGTCTGATTCTCATGTCAAAGAGAAGATATTGACTCTTATTGATATTTGGCAAGAAGCATTTGGAGGCCCGAGGGCAAGATATCCACAATATTTTGCTGCTTATCAGGAACTGTTGCGTGCTGGGGCAGTATTCCCTCCGAGATCGGAACAATCTGCACCTGTATTCACACCTCCACAAACACAGCCATTGGCATCATACCCTCAAAATATACGTGATTCAGATCCTCGTCAGGACACAGCTGAATCCTCTGCCGAGTCTGAGTTTCCTACTCTAAGTTTGACAGAAATTCAAAATGCTCGTGGCATCATGGATGTTCTTGCAGAAATGCTCAATGCCTTAGATCCTAGTAACAAAGAAGGGATTAGACAGGAAGTTATTGTTGACTTGGTGGAGCAGTGTCGAACTTACAAACAGAGGGTGGTACACCTTGTCAACTCAACTTCCGATGAATCACTGCTATGCCAAGGACTGGCGCTGAATGATGATCTACAGCGAGTACTGGCCAAGCACGAATCTATTTCTTCGGGAACTTCTGCCCAAAACCAAAATCCCACAGAAAATTCAAAACCTGCCCTTCCTGGAGCACTTGTAGATATAGATGCTCCTTTGGTTGATACTGGGGATACTAGCAAACAAACTAAAGAGAGACCCTCTTCTAATGTTGAAGCAGAATCCCAAACAATGAATCAGTTGTTGCTTCCTGCGCCTCCAACTTCTAATGGTTCAACGATTCCTGCTAAGGTTGACCCCAAATTGGACCTACTCAGTGGCGATGACTATAACTCTCCAAAAGCAGATGCTTCAAATGCTCTTGTTCCTGTAGGAGAACAGCCACCTGCTAGTCCTGTTTCTCAGCAGAATGCCCTTGTTCTTTTTGATATGTTTTCCAATGGAAATAATGCACCTACATCAGTCAATAGCCAGCTGCCCCAGCCAGCTAATGTTGCTAGCCAAAGCACTCCATATACTCCCCAATTTCAACAACAGCAAACAGTCATATCTCAAGGTGGATTTTACCCCAACGGAAATGTCCCAAATGCGGGTTCGCCTCAGTATGAGCAACAATCGCTCTATACACACGGTACAGGTTCTGCTTGGAATGGTCAGGTTGCACAACACCAGCAGCAACCACCTTCACCGGTTTATGGTACGCAAAGCGGTGGATCATTGCCACCCCCTCCTTGGGAAGCTCAATCAGCAGATAATGGAAGTTCAGTAGCTGGCGCTCAGTATCCATATGTGCAGAATGCTGCACATCCTCCAGGGTCTCAAACAATGGGCAATGACCAGGGTGTTGGCATGTATATGCAGCCAAATGCTAACAGCCATATGCCACGAATGAATAACCATGTTGGGAGCAATCAAATGGGCTTGCAACCTCAGCATATACAAGGTGTTGCAGGGCCCTACATGGGCATGGCTTCACATCAAATGCAGGGTGGTCCTGTGATGTATCCTCAACAGATGTACGGAACCCAATTTATGGGATACGGTTATGATCAGCAACAAGGAGTCCCTTATATTGAACAGCAAATGTATGGTATGTCTGTAAGAGATGACAGTGCTTTGAGAAACTCTTACCCAGTTTCTACCACATCTTATGCTCCATCTGGGAAACCTTCCAAGCCAGAGGATAAGTTATTTGGAGACCTTGTTGACATGGCAAAGGTGAAGCCCAATCCCACCCCAGGCCGAGCTGGTAGCATGTAA 1989 0.452 MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKKIGSKNSKVQLLALTLLETIIKNCGDIVHMHVAERDVLHDMVKIVKKKSDSHVKEKILTLIDIWQEAFGGPRARYPQYFAAYQELLRAGAVFPPRSEQSAPVFTPPQTQPLASYPQNIRDSDPRQDTAESSAESEFPTLSLTEIQNARGIMDVLAEMLNALDPSNKEGIRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESISSGTSAQNQNPTENSKPALPGALVDIDAPLVDTGDTSKQTKERPSSNVEAESQTMNQLLLPAPPTSNGSTIPAKVDPKLDLLSGDDYNSPKADASNALVPVGEQPPASPVSQQNALVLFDMFSNGNNAPTSVNSQLPQPANVASQSTPYTPQFQQQQTVISQGGFYPNGNVPNAGSPQYEQQSLYTHGTGSAWNGQVAQHQQQPPSPVYGTQSGGSLPPPPWEAQSADNGSSVAGAQYPYVQNAAHPPGSQTMGNDQGVGMYMQPNANSHMPRMNNHVGSNQMGLQPQHIQGVAGPYMGMASHQMQGGPVMYPQQMYGTQFMGYGYDQQQGVPYIEQQMYGMSVRDDSALRNSYPVSTTSYAPSGKPSKPEDKLFGDLVDMAKVKPNPTPGRAGSM* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1453 662 MobiDBLite consensus disorder prediction 264 282 - -
Vra6g1453 662 PANTHER TOM1-LIKE PROTEIN 1 656 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vra6g1453 662 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Vra6g1453 662 MobiDBLite consensus disorder prediction 264 319 - -
Vra6g1453 662 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Vra6g1453 662 SUPERFAMILY GAT-like domain 142 269 - -
Vra6g1453 662 MobiDBLite consensus disorder prediction 146 166 - -
Vra6g1453 662 CDD VHS 2 132 - -
Vra6g1453 662 CDD GAT_GGA_like_plant 188 266 - -
Vra6g1453 662 MobiDBLite consensus disorder prediction 142 182 - -
Vra6g1453 662 MobiDBLite consensus disorder prediction 621 642 - -
Vra6g1453 662 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Vra6g1453 662 PANTHER TARGET OF MYB PROTEIN 1 1 656 - -
Vra6g1453 662 Gene3D - 1 155 IPR008942 -
Vra6g1453 662 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Vra6g1453 662 MobiDBLite consensus disorder prediction 454 499 - -
Vra6g1453 662 Pfam VHS domain 3 115 IPR002014 GO:0035091|GO:0043130
Vra6g1453 662 Gene3D - 183 275 IPR038425 -
Vra6g1453 662 MobiDBLite consensus disorder prediction 454 479 - -
Vra6g1453 662 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1453 Vra-Chr6 28694341 28710817 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1453 - - gmx:732580 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1453 6 28694341 28710817 Vra6g1453 6 28694341 28710817 ECH