Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1445 ATGGCCAAATCAAAACATAGGTTTTCACTCACAAATATATCTACCACACTCTCGTCAACCACCATGCTCATACAAACTACTCTCCCCTTTGCATGCACTCCAAGAACTGTTCGCCACCGCAGCCTGCCACCCAAATCTGTTCTGTCAGTGTCCCCGCCATCAAAAGCGCGGAGGACCCACTCATTGCCGCCGGAAAAGTTAGAGGTTTTCAGGTCACTGGAAGGGTGGGCTTCGCAGTATGTCCTACCGCTGCTGAAACCCGTGGAAAAAAGCTGGCAGCCCAACAGTTTCGTTCCCAACCCATCGTCGCCGTTTGAAGAGTTCGTGGACGAGGTGAAGGCTCTTCGCGATCGAACCAAGGAGCTATCTGACGAGTACTTCTTGGTGCTGGTCGGTGACATGATCACAGAGGAAGCTCTTCCCACTTACCAGACCATAATGAACAGCCTCGACGGCGTGAAAGACGACTGCGGAACAAGCCCAAGCCCGTGGGCTGTGTGGAATCGAGGCTGGTCCGCAGAAGAGAACAGACATGGAGATTTGCTCAGAACATACTTGTATCTTTCTGGTCGTGTTAACATGAACATGATTGAAAAGACCATTCATTACCTCATTGCTGCAGGCATGGACGCTGGTTTTGAGAACAACCCATATCTGGGGTACGTGTACACATCATTCCAAGAGCGAGCGACGTTCGTGTCACATGGTAACACTGCTAGGCTCGCAAAGGAGGGTGGTGATCCTGTGCTGGCGCGCATATGCGGAACCATTGCTGCAGATGAGAAAAGACACGAGCAAGCGTACTCGAGGATCGTAGAGAAGCTTCTAGAAGTGGATCCCACGGGAGTAATGGTCGCAGTAGGAACCATGTTGGAGAAACGGATCACTATGCCGGCACATCTTATGTACGATGGGGAGGACCCCAGGCTGTTCGAGCACTATGCTGCAGTGGCCCAACGTGTGGGAGTGTACACCGTAAGTGACTATGCAGACATCTTGGAGTTCCTGATCGAACGGTGGAGATTGGAGAAGGTGGAAGGTTTGACGGGGGAGGGAAAGAGGGCTCAGGATTACGTGTGTGGATTAGCACCGAGGATTAGGAAGCTGCAAGAACGCGCTGAGGAGCGAGCGCGAAAGATGAAACCTCGTAGCATGAAGTTCAGCTGGATCTTCCATAAAGAGCTGCATTTGTGA 1194 0.5176 MAKSKHRFSLTNISTTLSSTTMLIQTTLPFACTPRTVRHRSLPPKSVLSVSPPSKARRTHSLPPEKLEVFRSLEGWASQYVLPLLKPVEKSWQPNSFVPNPSSPFEEFVDEVKALRDRTKELSDEYFLVLVGDMITEEALPTYQTIMNSLDGVKDDCGTSPSPWAVWNRGWSAEENRHGDLLRTYLYLSGRVNMNMIEKTIHYLIAAGMDAGFENNPYLGYVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAADEKRHEQAYSRIVEKLLEVDPTGVMVAVGTMLEKRITMPAHLMYDGEDPRLFEHYAAVAQRVGVYTVSDYADILEFLIERWRLEKVEGLTGEGKRAQDYVCGLAPRIRKLQERAEERARKMKPRSMKFSWIFHKELHL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1445 397 SUPERFAMILY Ferritin-like 55 395 IPR009078 -
Vra6g1445 397 PIRSF Dlt9_acylACP_des 17 397 IPR005067 GO:0006631|GO:0045300
Vra6g1445 397 PANTHER STEAROYL-[ACYL-CARRIER-PROTEIN] 9-DESATURASE 6, CHLOROPLASTIC 47 397 - -
Vra6g1445 397 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 47 397 IPR005067 GO:0006631|GO:0045300
Vra6g1445 397 CDD Acyl_ACP_Desat 65 373 IPR005067 GO:0006631|GO:0045300
Vra6g1445 397 Gene3D Ribonucleotide Reductase, subunit A 51 397 IPR012348 GO:0016491
Vra6g1445 397 MobiDBLite consensus disorder prediction 42 61 - -
Vra6g1445 397 Pfam Fatty acid desaturase 65 391 IPR005067 GO:0006631|GO:0045300
Vra6g1445 397 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1445 Vra-Chr6 28405119 28406780 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1445 16 397 Acyl Lipid Metabolism Gene Families AT1G43800 64.691 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1445 K03921 - gmx:100816146 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1445 6 28405119 28406780 Vra6g1445 6 28405119 28406780 ECH