Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1441 ATGATCACCGGAGAAGATTTGTACAAGGTGATGTGCGCCATGGTGCCTCTGTACTTCGCAATGCTGGTGGCGTACGGTTCGGTGAAATGGTGCAAGATGTTCAGCCCGGAGCAGTGTTCGGGCATAAACCGATTCGTGGCGGTTTTCGCCGTTCCGGTGCTCTCTTTCCACTTCATTTCGATGAACAACCCATACCAAATGAACACGAGGTTCATCATCGCGGACACACTCTCCAAGCTCCTCGTGCTTCTCTTCCTCTCGCTTTGGACCCTTTTCTTCGCCAAAGGCTCCCTGGAGTGGCTCATTACTCTCTTCTCCCTCGCCACTCTCCCCAACACCCTCGTCATGGGCATTCCCCTCCTCCAAGCCATGTACGGCGACTTCACCCACTCTCTCATGGTGCAACTCCTCGTCCTCCAATGCATCATATGGTATACTTTGCTTCTGTTTCTGTTCGAGTACCGGGCGGCGACGCTTTTGATCCAGAGGCAGTTTCCGGGGCAAGCGGCGGCGTCCATCACGAAATTCGAGGTGGACGGCGACGTTATATCGCTCGACGGCCACGACATGCCGCTGCGGACGGAGTCAGAGACCGACGAACATGGTCGGATCCGGGTGCGGATCCGGCGATCCGTTTCGTCGGCGCCGGAGTCCAGCTGCTCCATCGGCAACCCTGCCGTCCTCACTCCGCGACCCTCCAACCTCTCTAACGCCGACATTTTCTCCATCAACACGCCTCTGCACCTGCACGACGGCGACCCCCCCGCCGGCACCAGCCCCCACCTCTCTGGCTACGCCTCCTCCGACGCGTACTCGCTGCAGCCCACGCCACGGGCCTCAAACTTCAACGAGATGGAGGCCGGCACCCCCGTCTGGGGGTGCTCACCGGTCGCCGCGGGAAGAGTGTGCCTCCAGTCATCCCCGGTGGCCAGGGTGGTGTGGGAGTCCCCGGGGAAATGCGGTAGAGGAGAAGAGAGACAAGGTTGCAAGGACATTACTCTCTCAGATAAAGAAATGAGCTTCAGAGACAGCACGAAAGTCCCAAATGCGAAGGAGCAGAAAATGCCACATGCCTTTGTCATGATGAGGCTTATACTGGTTGTAGTAGGAAGAAAACTTTCCCGAAATCCTAATATATATTCCAGTGTATTAGGACTTCTTTGGTCTTTAGTCTCTTTCAAATGGAATATGGAAATGCCAAGTCTTATCAAATCATCCGTCAAAATCATCTCAGATGCCGGCCTTGGGATGGCTATGTTTAGCTTAGGGCTTTTCATGGCCCTTCAGCCCCGTATCATAGCCTGCGGTACTAAAAGGGCAGTTATGGGCATGCTCATTCGCTTCCTGTGTGGACCTCTTGTAATGTCTGTATCTTCCATTGCCATTGGATTGAGACATGACATACTTCACACTGCCATTGTACAGGCTGCTCTTCCACAGGGGATAGTGCCATTTGTATTTGCCAGAGAATATGGCCTGCATCCTGATATTTTGAGCACAGGGGTTATCTTTGGTATGCTGGTTTCCTTACCGATAAGTCTCTTATATTACATATTTCTTGGCATATGA 1569 0.5354 MITGEDLYKVMCAMVPLYFAMLVAYGSVKWCKMFSPEQCSGINRFVAVFAVPVLSFHFISMNNPYQMNTRFIIADTLSKLLVLLFLSLWTLFFAKGSLEWLITLFSLATLPNTLVMGIPLLQAMYGDFTHSLMVQLLVLQCIIWYTLLLFLFEYRAATLLIQRQFPGQAAASITKFEVDGDVISLDGHDMPLRTESETDEHGRIRVRIRRSVSSAPESSCSIGNPAVLTPRPSNLSNADIFSINTPLHLHDGDPPAGTSPHLSGYASSDAYSLQPTPRASNFNEMEAGTPVWGCSPVAAGRVCLQSSPVARVVWESPGKCGRGEERQGCKDITLSDKEMSFRDSTKVPNAKEQKMPHAFVMMRLILVVVGRKLSRNPNIYSSVLGLLWSLVSFKWNMEMPSLIKSSVKIISDAGLGMAMFSLGLFMALQPRIIACGTKRAVMGMLIRFLCGPLVMSVSSIAIGLRHDILHTAIVQAALPQGIVPFVFAREYGLHPDILSTGVIFGMLVSLPISLLYYIFLGI* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1441 522 MobiDBLite consensus disorder prediction 246 270 - -
Vra6g1441 522 Pfam Membrane transport protein 10 517 IPR004776 GO:0016021|GO:0055085
Vra6g1441 522 TIGRFAM 2a69: auxin efflux carrier 1 521 IPR014024 -
Vra6g1441 522 PANTHER AUXIN EFFLUX CARRIER COMPONENT 6 1 522 - -
Vra6g1441 522 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1441 Vra-Chr6 28315322 28321851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1441 1 500 Organic Solute Cotransporters AT1G77110 63.815 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1441 K13947 - gmx:100800139 886.33