Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1439 ATGCAGATACCACCTTCCAACTCCATCACCACTCAAACACTTGTTCCACGGCCTTATACAACAAACTCATGCCACCGCCACCTCTTGCCGCCGCCCAAGGCCGCCGTCTCCGCCGTCTGCGCGGCGTCGCTGAAGGCTCGGAGGACCCACTCAATGCCTCCGGAGAAAATTGAAATTTTCAAGTCGTTGGAGGGCTGGGCCTCGGAGTGGGTCCTACCACTGCTAAAGCCCGTGGAGCGATCCTGGCAGCCTCAGGACTTGGTCCCTGACTCATCACTGCCGTTCGAAGAGTTCAGCGAGGAGGTTAAAGCCCTTCGCGAACGCACCAAGGAGCTCCCAGACGAGTACTTCGTGGTGTTGGTGGGTGACATGATCACCGAAGACGCGCTTCCCACTTACCAGACCATGATCAACAACCTCGACGGCGTGAAAGACGACAGCGGAAGCAGTCCAAGCCCGTGGGCCGTGTGGACCCGGTCCTGGACCGCAGAAGAAAACCGACACGGAGATTTGCTCAGAAGTTATTTGTACCTCTCCGGTCGCGTTGACATGGCTAAGGTTGAGAAAACCGTCCATTACCTCATCGGAGCTGGCATGGACGTTGGAACAGAGAACAATCCTTATTTAGGGTTTGTGTACACTTCGTTCCAAGAGCGAGCAACTTTCGTGGCGCATGGGAACACTGCTCGGCTTGCGAAGGAAGGGGGTGATCCAGTGCTTGCGCGCATATGTGGAACCATTGCTGCGGATGAGAAGCGCCATGAGAATGCATATTCAAGGATTGTTGAGAAGCTTCTAGAAGTTGATCCCAGTGGAGCCATGGTTGCAATAGGAAGCATGATGGAGAAGAAGATCACAATGCCGGCACATCTTATGTACGATGGGGACGACCCTAAGCTATTCGACCATTACTCTGCAGTGGCCCAGCGATTGGGCGTGTACACAGCCAATGATTATGCAGATATCTTGGAGTTTCTGGTTGGACGGTGGAGATTGGAGAAGCTGGAAGGTTTGACGGGGGAAGGAAAGCGGGCACAGGATTACGTGTGCGGGTTAGCGCCTAGGATTAGGAAGTTGCAAGAACGCGCTGATGAGCGAGCGCGTAAGATGAAGGCGCAGAGTGTGAAGTTCAGTTGGGTCTTCAATAGGGAACTGCTTTTGTGA 1164 0.5404 MQIPPSNSITTQTLVPRPYTTNSCHRHLLPPPKAAVSAVCAASLKARRTHSMPPEKIEIFKSLEGWASEWVLPLLKPVERSWQPQDLVPDSSLPFEEFSEEVKALRERTKELPDEYFVVLVGDMITEDALPTYQTMINNLDGVKDDSGSSPSPWAVWTRSWTAEENRHGDLLRSYLYLSGRVDMAKVEKTVHYLIGAGMDVGTENNPYLGFVYTSFQERATFVAHGNTARLAKEGGDPVLARICGTIAADEKRHENAYSRIVEKLLEVDPSGAMVAIGSMMEKKITMPAHLMYDGDDPKLFDHYSAVAQRLGVYTANDYADILEFLVGRWRLEKLEGLTGEGKRAQDYVCGLAPRIRKLQERADERARKMKAQSVKFSWVFNRELLL* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1439 387 ProSitePatterns Fatty acid desaturases family 2 signature. 305 324 IPR005803 GO:0006633|GO:0016491
Vra6g1439 387 Gene3D Ribonucleotide Reductase, subunit A 40 387 IPR012348 GO:0016491
Vra6g1439 387 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 37 386 IPR005067 GO:0006631|GO:0045300
Vra6g1439 387 PANTHER STEAROYL-[ACYL-CARRIER-PROTEIN] 9-DESATURASE 6, CHLOROPLASTIC 37 386 - -
Vra6g1439 387 CDD Acyl_ACP_Desat 55 363 IPR005067 GO:0006631|GO:0045300
Vra6g1439 387 PIRSF Dlt9_acylACP_des 13 387 IPR005067 GO:0006631|GO:0045300
Vra6g1439 387 Pfam Fatty acid desaturase 55 381 IPR005067 GO:0006631|GO:0045300
Vra6g1439 387 SUPERFAMILY Ferritin-like 44 386 IPR009078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1439 Vra-Chr6 28306980 28308475 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1439 8 385 Acyl Lipid Metabolism Gene Families AT1G43800 72.251 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1439 K03921 - gmx:100037478 666.766