Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1427 ATGGATGCTTCGTCTTCCTCGAGTCAACCCGAATTCGATTACTTGTTCAAGCTTCTCTTGATTGGGGATTCTGGCGTTGGCAAAAGCACCCTGCTTTTGAGCTTCACCTCCGATAATTTCGAGGATCTTTCTCCCACCATCGGTGTAGATTTCAAAGTTAAATATGTTACAATTGGAGGAAAAAAGCTAAAACTTGCTATTTGGGACACAGCGGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTATAGAGGAGCTCAAGGAATAATTTTGGTATATGATGTCACAAGGCGGGAAACTTTTACGAATCTATCTGATATATGGGCTAAAGAAATTGACCTTTACTCAACCAATCAAGATTGCATCAAGATGCTTGTAGGAAACAAAGTTGATAAGGAAAGTGAAAGAGTTGTCAGCAAAAATGAAGGGATAAACTTTGCAAGGGAATATGGATGTCTGTTTACTGAGTGCAGTGCAAAAACAAGAGTCAATGTTGCACAATGTTTTGATGAGCTTGTAATGAAGATTTTGGAGACACCAAGTCTCTTGGCTGAGGGCTCATCTGGTGGGAAAAAGAACATCTTCAAACAGAAAGCACAAAATTCTGATGCTACAAGTGGTGGCTGCTGCTCATGA 639 0.4006 MDASSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSDNFEDLSPTIGVDFKVKYVTIGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKNEGINFAREYGCLFTECSAKTRVNVAQCFDELVMKILETPSLLAEGSSGGKKNIFKQKAQNSDATSGGCCS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1427 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 184 IPR027417 -
Vra6g1427 212 TIGRFAM small_GTP: small GTP-binding protein domain 14 172 IPR005225 GO:0005525
Vra6g1427 212 PANTHER LD21953P-RELATED 7 212 - -
Vra6g1427 212 ProSiteProfiles small GTPase Rab1 family profile. 11 211 - -
Vra6g1427 212 ProSiteProfiles small GTPase Ras family profile. 8 212 IPR001806 GO:0003924|GO:0005525
Vra6g1427 212 CDD Rab18 16 177 - -
Vra6g1427 212 SMART ras_sub_4 13 180 - -
Vra6g1427 212 PANTHER BNAA05G18680D PROTEIN 7 212 - -
Vra6g1427 212 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Vra6g1427 212 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Vra6g1427 212 ProSiteProfiles small GTPase Rho family profile. 9 178 - -
Vra6g1427 212 Gene3D - 9 211 IPR027417 -
Vra6g1427 212 PRINTS Transforming protein P21 ras signature 16 37 - -
Vra6g1427 212 PRINTS Transforming protein P21 ras signature 38 54 - -
Vra6g1427 212 PRINTS Transforming protein P21 ras signature 56 78 - -
Vra6g1427 212 PRINTS Transforming protein P21 ras signature 120 133 - -
Vra6g1427 212 PRINTS Transforming protein P21 ras signature 155 177 - -
Vra6g1427 212 SMART rab_sub_5 16 180 - -
Vra6g1427 212 SMART ran_sub_2 21 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1427 Vra-Chr6 28106384 28111235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1427 17 113 EF-hand Containing Proteins AT5G27540 26.804 5.71e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1427 K07910 - gmx:121173094 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1427 6 28106384 28111235 Vra6g1427 6 28106384 28111235 ECH