Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1426 ATGGTGAAGGAAACGGAGTACTACGATATCCTCGGGATCACTCCCTCTGCCTCCGAAGACCAAATTCGCAAGGCCTATTACCATAAGGCAATGCAAGTTCATCCCGATAAAAACCCGAACGATCCTCGCGCTGCCGAGAAGTTCCAGATATTGGGTGAAGCGTACCAAGTTTTGAGTGATCCGGTTCAGAGGAATTCGTACAATCAAAATGGGAAGCATTCTGTATCGAGGGAAACTATGCTTGACCCCATGGCTGTCTTTGCCCTGCTCTTTGGAAGTGAATTATTTGAGGACTACATAGGGCATCTGGCTGTGGCATCAATGGCTTCTTCTGAGCTTGCTGATGAGAGTGAAGATCCTGATAAACTGAATGAGAAGTTAAAGGCTGTCCAAAGAGAAAGGGAAGAAAAGCTAGCAAGAAATTTGAAAGATTATCTTGCCCAATATGTTCGTGGTGACAAAAAGGGATTCTTCCTACGAGCAGAATCTGAAGCAAGACGGCTTTCTCGTGCTGCATTTGGAGTAGACATGTTACATACCATCGGCTACATATATTCAAGACAGGCAGCACAAGAACTAGGGAAAAAGGCCATTTATCTTGGAGTGCCATTTTTGGCTGAATGGGTACGCAATAAAGGACATTTCTGGAAATCACAACTCACAGCTGCTAAAGGTGCTTATCAGTTAATTCAGCTTCAAGAAGACATCCGCAAGCAATTCAAAATGGATGGTAGTAGTGGCCCTGAAAATGATGTTGACTCTCACATTCGCCTCAATAAGGACACATTGATCAGTTCCTTGTGGAAGTTAAATGTAGTAGACATAGAAGTAACCCTTGTACACGTGTGCCAAATGGTGCTAAAGGAAAACAATGTCAAGAAAGAGGAACTTAAAGTTCGGGCTACTGCTCTTAAAATTCTTGGGAAGATATTTCAGGACAAGTATCCAAAAGGAGAAACATTGAGGAAGAAGATTGCAGCTAATTCTGATGACGAAGGAAGCACTTCTGATTCTTCAGACGATGAATCGCCTAGAGCAATTTCCTATCGAACTCCCTTTTTCACGCAGGGTCTCGGTAGACTTTTCAAATGCCTCTGTAATCCAGCATTTGATGTGGATGATGAAGAGATAGTTTACAAAAGCAAATGA 1149 0.4282 MVKETEYYDILGITPSASEDQIRKAYYHKAMQVHPDKNPNDPRAAEKFQILGEAYQVLSDPVQRNSYNQNGKHSVSRETMLDPMAVFALLFGSELFEDYIGHLAVASMASSELADESEDPDKLNEKLKAVQREREEKLARNLKDYLAQYVRGDKKGFFLRAESEARRLSRAAFGVDMLHTIGYIYSRQAAQELGKKAIYLGVPFLAEWVRNKGHFWKSQLTAAKGAYQLIQLQEDIRKQFKMDGSSGPENDVDSHIRLNKDTLISSLWKLNVVDIEVTLVHVCQMVLKENNVKKEELKVRATALKILGKIFQDKYPKGETLRKKIAANSDDEGSTSDSSDDESPRAISYRTPFFTQGLGRLFKCLCNPAFDVDDEEIVYKSK* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1426 382 CDD DnaJ 6 60 IPR001623 -
Vra6g1426 382 SMART dnaj_3 5 63 IPR001623 -
Vra6g1426 382 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 366 - -
Vra6g1426 382 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Vra6g1426 382 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 366 - -
Vra6g1426 382 Pfam DnaJ domain 6 68 IPR001623 -
Vra6g1426 382 Pfam X-domain of DnaJ-containing 131 314 IPR026894 -
Vra6g1426 382 Gene3D DnaJ domain 1 85 IPR036869 -
Vra6g1426 382 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Vra6g1426 382 MobiDBLite consensus disorder prediction 325 344 - -
Vra6g1426 382 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vra6g1426 382 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vra6g1426 382 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vra6g1426 382 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1426 Vra-Chr6 28099544 28105198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1426 7 81 Miscellaneous Gene Families AT1G16680 41.558 5.16e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1426 - - gmx:100793811 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1426 6 28099544 28105198 Vra6g1426 6 28099544 28105198 ECH