Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1373 ATGTCTTCTTCCTCCGGCTACGTCCGCTCCTCCCAACGAGCCTCCATCTCGCCGCTCCGTTCGCGGAAATCGCCGGCGGGACCCGCCAAGCCCGCCGGAAGACCTACCACACCGTCCTCCTCCTCCACCTCCTCGAGGCCGTCGACCAAGGCCTCTATATCTTCGGTGGCTGCCGCCGCCGTGCTCGACTTGAGCAAGGCGAAGGAGAATGTCTCTGTCACAGTTCGGTTTCGACCCCTCAGTGGGAGAGAAATTAATAAGGGGGACGAGGTGGCGTGGTATGCGGATGGGGATCATATAGTGAGGAATGAGTACAATCCTTCCATTGCTTATGGCTTTGATAAGGTATTTGGGCCAGCCACAACAACTCGGCATGTTTATGATGTGGCTGCTCATCATGTTGTCAGTGGTGCAATGGAAGGGATTAACGGTACTGTTTTTGCATATGGTGTTACTAGTAGTGGAAAGACTCATACCATGCACGGGGAGCAAAAGTCACCTGGAATTATCCCACTTGCAGTGAAGGATGTCTTCAGTATAATACAAGAGACTCCTGGTCGGGAATTCTTATTACGTGTCTCATATCTTGAGATTTACAATGAGGTCATTAATGACTTGCTGGATCCAATTGGGCAGAATCTAAGAATACGAGAGGATGCTCAGGGTACTTATGTTGAAGGAATCAAAGAGGAAGTTGTGCTATCTCCTGCTCATGCCCTTTCTTTGATTGCTACTGGAGAAGAGCATAGACACGTGGGTTCAAATAATTTCAATCTTGTTAGCAGTCGAAGCCACACTATTTTCACCTTGACTATTGAAAGCAGTTCGCGAGGGGAAAATACAGGGGAAGAGGATGTGACATTGTCCCACCTGCACTTAATTGATCTTGCAGGTTCAGAAAGTTCTAAAGCTGAAACAACTGGTTTGCGGAGAAAAGAAGGTTCTTATATTAATAAAAGCTTGCTTACTCTTGGAACGGTGATTGCTAAACTAACAGATGGAAAGGCAACTCATATTCCTTATCGAGATTCAAAGCTCACTCGATTGTTACAATCATCCCTTAGTGGCCATGGAAGGATTTCTCTCATTTGCACAGTTACTCCCGCATCTAGCAGTAGTGAAGAGACACATAACACATTAAAATTTGCTCACAGGAGTAAGCATGTTGAAATCAAAGCTTCTCAAAATAAGATTTTGGATGAGAAGTCTTTGATCAAGAAATACCAGAGGGAAATTTCTGAGTTAAAGCAGGAGCTGCAACATTTAAAGCGTGGCATGGTTGAGAATCCCAATATGGCCACATCTTCACAAGAAGATCTGGTTAATTTGAAGCTTCAGCTTGAAGCTGGCCAATCCAAATTGAAGTCGAGATTGGAAGAGGAGGAACAAGCTAAAGCAGCATTGATGGGAAGAATTCAACGTCTAACCAAATTAATCTTGGTTTCTACAAAGAATACAATGTCATCAAGCATTCCAGAAAGGCCCAGCCATAGACGGAGGCATTCTTTTGGGGAAGATGAGCTAGCATATTTACCAGATAGAAAACGTGAGTCCTGGATAAATGATGATGCAGGGAGCCACGCTTCAGTTCCTTCACCAGAAGAAAAGGATGATGTTATCAATTTAGATGAATTGGGGAAGGATTACAAAAGAAGCAAAAGGCGGGGAATGCTTGGGTGGTTGAAGCTAAGAAAACCTGATAATGTTGATGGATTATCACCAAATGTTGATAGTGAAGGGTCTGCAAATGGATCACCTGCATCTGGCTCAAAATTAACTTCAACTAGAGTTATGCTTTATGACATGAAAGATTCACGCAGGAATTCAGTCAGCAGAAAGGATAATGCCCCAGCCATTAATTCTTTTCCAGGAAGAACTCAAGCAGGTGATTTATTCAGTTTAACTGTTGGAGGCCGTGAACTTCCTCCGACTGGAACGACTGTTACAGATCAAATGGATCTACTGCGGGAACAAGTGAAAATGTTGGCTGGTGAGGTGGCCTTCTGCATTAGTTCTCTGAGAAGACTGTCAGAGGAAGCTGCTAACAAGCCTGAAGATATCCAACTACAAGAGGACATGCATAAGTTGAAGGGTGAAATTAGCCAAAAGAAGAATCAGATCCGTATCCTGGAACAACGGATGATTGGATCCTTAGGACATGCACCAAGTAATAGCGAAATGTCACAGGCTCTATCCAAGCTTACCACTGAGCTCAATGAAAAAATATTTGAACTTGAGATCAAGTCTGCAGATAACAGGATACTTCAAGAGCAATTGCAGTTGAAGAATTCAGAGAATGCTGAGATGCAAGAGACAATTATTTCACTAAAGAAACAGATAAATTTCTTGGATAAATCATCAACTTATTATCGTCATGTTGCTGATAATGAGACTGACTATTCTATAGACGTATTGGGAAAGGCTGATGAAGCACAATCAATCAAAAACTTGAATGTGATAGTTTCTCAAGTGCAGGAAGGAAGTAACGATTCAATTATAAGTTCTGAAATTCTTGTGCAGGCTGCGGAAATAGAGAATTTAAGGCAAGAGAATGTGAGATTGGCAGAAGAGAAAGACGGGCTTGAAATTCAAAGTCAGAAACTTGCGGAGGAAGCTTCATATGCAAAAGATTTGGCAGCAGCCGCAGCAGTTGAGCTCCGAAACCTGGCTGAAGAAGTGACTAAACTTACATATGAAAATGCAGAGCTGAGTGGTGATCTGGCAGCTGCAAAAGAGACACCTGGCAAGTCAAACTTGTCTCCAGCATCTTATGAAAGCAAGCAAAATGTAAAGAATAATTTTCATTTAGATGGGAAATCAAAAAAGCGTGGGAATGAATTTCTTATTGAGGAGTTGCAGAAGGACCTTAGTGCTAGACTCCAAAGAGAAGCTGCACTAGAAGCAGCTCTGTCTGTGAAAGTCGAAGTAGAAGCTGACCTAAGAAGGACAATTGATGAAATAAAACACCAAAAACAAGATTTGGAATATGAGCTTTCTAGCTTGCAGATATTGGTGTCAAAGATGAGAAAGTCTGGCATTAATGTTGAGGACAAGTCAACAGTTCATGTGCGTGATGATGTACAAACCAAGGTTAAAAGCGGATATCCAACATCTAATGGGTACTCTCATAGGAAACAGTACAAAGAAGCTGAAACTTTGGGAAGCATGGAAGATATGATTGCATTAGAAGAACTAAGGGCTAATTATCAAAGAGAGAGAAGAAGATGCAAGGAACTTGAAAGTCATATTTCTATATTGAAGGGTGAGGATATCGCTGGTCTGGATGTTTTGGCTCTTGAAGAACTACAAAACCTTCATATTGAGGCAATAACAAAGATTTGCCAGGCAAAGTACGCCAATCAAAACTTATAG 3372 0.4235 MSSSSGYVRSSQRASISPLRSRKSPAGPAKPAGRPTTPSSSSTSSRPSTKASISSVAAAAVLDLSKAKENVSVTVRFRPLSGREINKGDEVAWYADGDHIVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAHHVVSGAMEGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFSIIQETPGREFLLRVSYLEIYNEVINDLLDPIGQNLRIREDAQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLVSSRSHTIFTLTIESSSRGENTGEEDVTLSHLHLIDLAGSESSKAETTGLRRKEGSYINKSLLTLGTVIAKLTDGKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSSSEETHNTLKFAHRSKHVEIKASQNKILDEKSLIKKYQREISELKQELQHLKRGMVENPNMATSSQEDLVNLKLQLEAGQSKLKSRLEEEEQAKAALMGRIQRLTKLILVSTKNTMSSSIPERPSHRRRHSFGEDELAYLPDRKRESWINDDAGSHASVPSPEEKDDVINLDELGKDYKRSKRRGMLGWLKLRKPDNVDGLSPNVDSEGSANGSPASGSKLTSTRVMLYDMKDSRRNSVSRKDNAPAINSFPGRTQAGDLFSLTVGGRELPPTGTTVTDQMDLLREQVKMLAGEVAFCISSLRRLSEEAANKPEDIQLQEDMHKLKGEISQKKNQIRILEQRMIGSLGHAPSNSEMSQALSKLTTELNEKIFELEIKSADNRILQEQLQLKNSENAEMQETIISLKKQINFLDKSSTYYRHVADNETDYSIDVLGKADEAQSIKNLNVIVSQVQEGSNDSIISSEILVQAAEIENLRQENVRLAEEKDGLEIQSQKLAEEASYAKDLAAAAAVELRNLAEEVTKLTYENAELSGDLAAAKETPGKSNLSPASYESKQNVKNNFHLDGKSKKRGNEFLIEELQKDLSARLQREAALEAALSVKVEVEADLRRTIDEIKHQKQDLEYELSSLQILVSKMRKSGINVEDKSTVHVRDDVQTKVKSGYPTSNGYSHRKQYKEAETLGSMEDMIALEELRANYQRERRRCKELESHISILKGEDIAGLDVLALEELQNLHIEAITKICQAKYANQNL* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1373 1123 PANTHER KINESIN-LIKE PROTEIN KIN-7C, MITOCHONDRIAL 55 1109 - -
Vra6g1373 1123 Coils Coil 886 906 - -
Vra6g1373 1123 Coils Coil 1059 1089 - -
Vra6g1373 1123 Gene3D Kinesin motor domain 61 421 IPR036961 -
Vra6g1373 1123 Coils Coil 693 713 - -
Vra6g1373 1123 Coils Coil 837 871 - -
Vra6g1373 1123 Coils Coil 973 1004 - -
Vra6g1373 1123 CDD KISc_CENP_E 70 389 - -
Vra6g1373 1123 Coils Coil 747 786 - -
Vra6g1373 1123 ProSitePatterns Kinesin motor domain signature. 289 300 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra6g1373 1123 SMART kinesin_4 68 397 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1373 1123 MobiDBLite consensus disorder prediction 1 50 - -
Vra6g1373 1123 MobiDBLite consensus disorder prediction 1 19 - -
Vra6g1373 1123 MobiDBLite consensus disorder prediction 34 50 - -
Vra6g1373 1123 PRINTS Kinesin heavy chain signature 141 162 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1373 1123 PRINTS Kinesin heavy chain signature 255 272 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1373 1123 PRINTS Kinesin heavy chain signature 290 308 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1373 1123 PRINTS Kinesin heavy chain signature 339 360 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1373 1123 ProSiteProfiles Kinesin motor domain profile. 70 389 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1373 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 424 IPR027417 -
Vra6g1373 1123 Coils Coil 391 425 - -
Vra6g1373 1123 PANTHER CENTROMERE PROTEIN E 55 1109 - -
Vra6g1373 1123 Pfam Kinesin motor domain 76 389 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1373 1123 Coils Coil 949 969 - -
Vra6g1373 1123 MobiDBLite consensus disorder prediction 574 595 - -
Vra6g1373 1123 Coils Coil 451 478 - -
Vra6g1373 1123 MobiDBLite consensus disorder prediction 568 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1373 Vra-Chr6 26990630 27024023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1373 66 715 Miscellaneous Gene Families AT5G06670 60.000 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1373 K11498 - gmx:100817131 1864.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1373 6 26990630 27024023 Vra6g1373 6 26990630 27024023 ECH