Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1358 ATGGCTCAAGTGGGTTCTCTCTCCGCCGAAATGGAGACCCTGAACCATGTACTTTCCCTGGTGGAGGCATTCAGAGCCTTCGACGCCGACAACGATGGGCGAATCACGAAGGCAGAGCTTGGAGGAATCTTGGGCTCACTCGGGTACAACGCTAGCGAGCAAGAAGTGAGTGCAATGATGCAAGAAGGTGACAAAAACAGAGATGGGTTTTTGAGCATACACGAGTTCTTGGAGATGAACACCAGAGACTTGGAGGGTGGGAATCTCGCCAGCACTCTCAGCACTGCGTTTGAAGCGTTGGATGAAGATGGGAACGAGATTCTGACCGGTGAAGACCTTCATGGCGTCATGCAAAACTTAGGTCTGGACTTGTCCCTTGAAAACTGTGTTCATCTTGTAGCTTCTCTTGATGCAGACGGAGATGGAGCTGTGAGCTTGGATGAATTCAGACTCATAGTTGATTCCCTCGTCTGA 474 0.5042 MAQVGSLSAEMETLNHVLSLVEAFRAFDADNDGRITKAELGGILGSLGYNASEQEVSAMMQEGDKNRDGFLSIHEFLEMNTRDLEGGNLASTLSTAFEALDEDGNEILTGEDLHGVMQNLGLDLSLENCVHLVASLDADGDGAVSLDEFRLIVDSLV* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1358 157 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Vra6g1358 157 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
Vra6g1358 157 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Vra6g1358 157 SMART efh_1 92 120 IPR002048 GO:0005509
Vra6g1358 157 SMART efh_1 128 156 IPR002048 GO:0005509
Vra6g1358 157 SMART efh_1 55 83 IPR002048 GO:0005509
Vra6g1358 157 SMART efh_1 19 47 IPR002048 GO:0005509
Vra6g1358 157 PANTHER CALCIUM BINDING PROTEIN 12 154 - -
Vra6g1358 157 Gene3D - 13 155 - -
Vra6g1358 157 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Vra6g1358 157 Pfam EF-hand domain pair 93 150 IPR002048 GO:0005509
Vra6g1358 157 Pfam EF-hand domain pair 21 79 IPR002048 GO:0005509
Vra6g1358 157 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 12 154 - -
Vra6g1358 157 SUPERFAMILY EF-hand 16 154 IPR011992 -
Vra6g1358 157 CDD EFh 20 79 IPR002048 GO:0005509
Vra6g1358 157 ProSiteProfiles EF-hand calcium-binding domain profile. 124 157 IPR002048 GO:0005509
Vra6g1358 157 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Vra6g1358 157 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1358 Vra-Chr6 26562156 26562833 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1358 16 153 EF-hand Containing Proteins AT1G24620 34.058 1.21e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1358 - K02183 gmx:100782291 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1358 6 26562156 26562833 Vra6g1358 6 26562156 26562833 ECH