Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1356 ATGCGTGAAGGGCTTGCGTGTGACGTTGCCGGCGTGGCGTCGTCTCCGGCACCACCGGTGGTTGTGACGGGACGGAGCCGTTCGCAGGGATTTCCACGGCGAGTGACGCCCGCGGCGCTGCCTCTGGCGCCGTTTTCTGGATCGGCGGTTGAGCGTGTTCTTCCTAACGGCGACTTCTACGCCGGGAGCTTCTCCGGCAACGTTCCTCACGGATCGGGGAAGTACCTGTGGACTGACGGGTGCATGTACGAGGGTGAGTGGAAGCGGGGAAAGGCCTCCGGCAAGGGGAAATTCTCGTGGCCCTCGGGCGCGACCTATGAGGGCCAGTTCAAATCGGGTAGAATGGAAGGGTTTGGAACCTTTGTCGGATCCGACGGCGACACCTACCGTGGGTCGTGGATCTCCGACCGGAAACACGGGTTTGGACAGAAGCGCTACGCGAACGGGGACTTGTACGAAGGGTGTTGGAAGCGCAACGTGCAGGACGGTCACGGACGTTACGTCTGGAAGAACGGGAACGAGTACGTCGGGGAATGGAAGAACGGCGTGATTAACGGCAAGGGTGCTCTGGTGTGGGCCAACGGGAATCGTTACGAGGGGCAGTGGGAGAACGGGGTCCCCAAGGGTCACGGCGTTATGAAGATTCAGCATCGTTTGCTCTGGGGCGAGAATTTCAGCGTGAAGCGTTTCTCCGTTGACGGAAGAGGGAGCGTAAATAATGACAAGAGTTTTCCCAGGATTTGCATCTGGGAGTCGGAGGGTGAAGCGGGAGACATCACGTGCGATATTATCGATAATGTGGAAGCGTCCATGTTTTACCGTGACGGAACGACGTCGGATTCTGAAGATTTGAGAAGGAACCCTTGTTGTTTCGCCAGCGAAGTGAAGAGACCCGGGGAAACAATTTCGAAAGGTCATAAGAATTATGACTTGATGCTTAATCTGCAATTGGGGATAAGGTACTCTGTTGGGAAGGAGGGTTCCACTTTGCGGGAGCTTAAACAGAGTGATTTTGATCCGAAGGAGAAGTTCTGGACTAGGTTTCCCTCCGAGGGATCCAAGATTACGCCGCCGCATCAGTCCGCCGAGTTTAGATGGAAGGATTACTGTCCGGTGGTTTTTAGGCATTTGAGAAAGCTGTTTCAGGTCGATCCTGCTGATTACATGTTGGCTATATGTGGGGATGATGCTCTTCGGGAGCTTTCTTCTCCTGGGAAAAGTGGAAGCATCTTCTACTTGACCCAGGATGATAGATTCATGATAAAGACGGTGAAGAAATCTGAAGTCAAGGTGCTTCTTCGGATGCTTCGAAGTTATTATCAACATGTTTCTCGATATGAGAATTCACTTGTGACAAAATTCTATGGGGTGCACTGTGTTAAGCCGATTGGAGGCCAGAAGATCCGGTTCATTGTGATGGGCAATCTTTTTTGTTCCGAATATCCAATTCATAGACGATTTGACTTGAAAGGATCTTCACATGGGCGCACCACAGATAAACCTAAGGAGGACATTGATGAAACGACCACCCTCAAAGACCTTGATCTCAACTTTGCGTTTCGTGTACAAAGAAATTGGTTTCAGGAACTCATCAAACAAATTGAGCTGGACTGTGAGTTCTTGGAAGCCGAGAAAATTATGGATTACAGTCTTCTAGTTGGCATTCATTTTCGTGATGATAATACGTGTGACAAAATGGGGCTTTCACCTTTTCTCCTGCGCACTGGCAATAGGGATACTTATCAGAATGAGAAGTTCATGCGTGGTTATCGCTTTCTTGAAGCAGAGCTACAAGATAGAGATAGAGTTAAATCTGGAAGGAAATCATTGATTAGGCTAGGAGCCAATATGCCTGCAAGAGCTGAGCGAGTGGCACGGAGGAGTGACTTCGATCAATACACCACTGTTGGAATCAGCCATTTGACCCCTTATAGTAGCGGGGAGACTTACGATGTGATTCTATATTTTGGGATTATTGACATTTTGCAAGATTATGATATCAGCAAGAAGCTTGAGCATGCTTACAAGTCATTGCAAGTTGACCCTTCTTCAATTTCTGCTGTTGATCCAAAGCTCTACTCCAAGAGGTTTCGTGATTTTGTGGGTAGAATTTTCATCGAAGAGAGGTAG 2130 0.4948 MREGLACDVAGVASSPAPPVVVTGRSRSQGFPRRVTPAALPLAPFSGSAVERVLPNGDFYAGSFSGNVPHGSGKYLWTDGCMYEGEWKRGKASGKGKFSWPSGATYEGQFKSGRMEGFGTFVGSDGDTYRGSWISDRKHGFGQKRYANGDLYEGCWKRNVQDGHGRYVWKNGNEYVGEWKNGVINGKGALVWANGNRYEGQWENGVPKGHGVMKIQHRLLWGENFSVKRFSVDGRGSVNNDKSFPRICIWESEGEAGDITCDIIDNVEASMFYRDGTTSDSEDLRRNPCCFASEVKRPGETISKGHKNYDLMLNLQLGIRYSVGKEGSTLRELKQSDFDPKEKFWTRFPSEGSKITPPHQSAEFRWKDYCPVVFRHLRKLFQVDPADYMLAICGDDALRELSSPGKSGSIFYLTQDDRFMIKTVKKSEVKVLLRMLRSYYQHVSRYENSLVTKFYGVHCVKPIGGQKIRFIVMGNLFCSEYPIHRRFDLKGSSHGRTTDKPKEDIDETTTLKDLDLNFAFRVQRNWFQELIKQIELDCEFLEAEKIMDYSLLVGIHFRDDNTCDKMGLSPFLLRTGNRDTYQNEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERVARRSDFDQYTTVGISHLTPYSSGETYDVILYFGIIDILQDYDISKKLEHAYKSLQVDPSSISAVDPKLYSKRFRDFVGRIFIEER* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1356 709 PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 2 25 217 - -
Vra6g1356 709 PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 2 226 708 - -
Vra6g1356 709 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 303 705 IPR002498 GO:0016307|GO:0046488
Vra6g1356 709 Gene3D - 62 112 - -
Vra6g1356 709 Gene3D - 113 157 - -
Vra6g1356 709 Gene3D - 158 219 - -
Vra6g1356 709 CDD PIPKc_AtPIP5K_like 308 704 - -
Vra6g1356 709 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 393 703 IPR002498 GO:0016307|GO:0046488
Vra6g1356 709 SMART morn 58 79 IPR003409 -
Vra6g1356 709 SMART morn 104 125 IPR003409 -
Vra6g1356 709 SMART morn 127 148 IPR003409 -
Vra6g1356 709 SMART morn 150 171 IPR003409 -
Vra6g1356 709 SMART morn 173 194 IPR003409 -
Vra6g1356 709 SMART morn 81 102 IPR003409 -
Vra6g1356 709 SMART morn 196 217 IPR003409 -
Vra6g1356 709 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 294 475 IPR027484 -
Vra6g1356 709 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 55 159 - -
Vra6g1356 709 Pfam MORN repeat 83 104 IPR003409 -
Vra6g1356 709 Pfam MORN repeat 175 197 IPR003409 -
Vra6g1356 709 Pfam MORN repeat 106 128 IPR003409 -
Vra6g1356 709 Pfam MORN repeat 60 82 IPR003409 -
Vra6g1356 709 Pfam MORN repeat 198 213 IPR003409 -
Vra6g1356 709 Pfam MORN repeat 152 173 IPR003409 -
Vra6g1356 709 Pfam MORN repeat 129 150 IPR003409 -
Vra6g1356 709 PIRSF PIP5K_plant 43 226 IPR017163 GO:0005524|GO:0016308
Vra6g1356 709 PIRSF PIP5K_plant 218 709 IPR017163 GO:0005524|GO:0016308
Vra6g1356 709 SUPERFAMILY SAICAR synthase-like 304 705 - -
Vra6g1356 709 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 25 217 IPR023610 -
Vra6g1356 709 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 226 708 IPR023610 -
Vra6g1356 709 Gene3D - 476 705 - -
Vra6g1356 709 SMART PIPK_2 334 706 IPR002498 GO:0016307|GO:0046488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1356 Vra-Chr6 26513660 26517923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1356 12 708 Acyl Lipid Metabolism Gene Families AT1G21980 73.407 0.0 1082
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1356 K00889 - gmx:100790632 1353.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1356 6 26513660 26517923 Vra6g1356 6 26513660 26517923 ECH