Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1351 ATGCATCCCTTCTGCTGTGTCTCCGTAGTCTCCGACCACTCCTCTCCGATCACCCTCGACATGCCCCCTATCCCCGCCGCACCCAGATCCGACCCTGCTCACCGAACTGGACAAGCCCTCCACTCCCTCACCAACGGCGGTGAAGGCGGCCGTGCACACCCCTTGCCGGTTCCCACCGCTGTGGACGTCAGGATCAAAGACCTCGTCGGGAACGGAATCTCCGGGATTCTGCACAAGTGGGTGAACTATGGCAAAGGATGGAGAACGCGCTGGTTCGTGCTTCAAGATGGCGTCCTTTCCTATTACAAGATTCATGGACCCGACAAGATCATCGTAAACTCCGAAACCGAGAAGGGATCGAAGGTCATTGGCGAGGAATCCGCGCGACTGATCTCTCGCAACCGCAATTCGAATCATGTCGATCGTCGCCGAAAGCCCGTCGGTGAAATCCATCTCAAGGTTTCGACTATACGTGAGAGCAGGTCCGATGACAAGCGATTCTCTGTTTTCACTGGGACTAAGAGACTCCATTTGAGGGCCGAGACTCCTTATGATCGGGTGGCATGGATGGAGGCCTTGCAGGCAGTGAAAGATATGTTTCCCCGGATATCGAATAGTGAGTTGATGGCTCCAGTAGACAATGTGGCTGTTTCGACAGAGAAACTCAGGCTTCGACTTATGGAGGATGGAGTGAGTGAGGAAGCCATTCGGGACAGTGAACAGATAATGAGAAATGAGTATGCCACACTCCAAAACCAGCTTCTGCTGCTTAAACAAAAGCAGGTGGCTCTAATCGACACTCTGCGGCAATTAGAGACAGAAAAGGTGGATCTGGAGAATACTGTGGTTGATGAAAGCCAAAGACAGTTGAATGATCAAGAGGTTTCCTCTAGATTAGGGCAGGAAAAATCTAGTGAAGAAAGTGGAACTGAGTCTGAGGATGATAATGAGAGAAATGATGCAGCTGAGGAAGAAACAGATGATGAAGACACTACCTTTTTTGACACTCGAGATTTTCTGTCATCTTCGAATTCTTTTAAAAGTAATGCTTCTGATATTAGGGTCTCGTCTTTCTCTTCAGACGATGAAGGACTCTATGCTGTTGAATCAGAGGAGGATGTAGATCCTTCCATTAGATCTGTTGGATTCAACTATCCTTACGTTAAGCGGCGAAAGAAATTACCTGATCCTGTTGAAAAGGAGAAAGGTGTCAGCCTTTGGTCAATGATTAAGGATAATATTGGGAAGGATCTGACAAAAGTTTGCCTTCCTGTTTATTTTAATGAGCCTCTCTCCTCTTTGCAAAAATGCTGTGAAGAAATGGAATACTCATATCTTCTAGACCGAGCATATGAATGGGGAAGAAGGGGTAATAGCCTCATGAGAATTCTCAATGTTGCTGCTTTTGCTGTATCTGCCTATGCTTCGACTGAAGGAAGAATCTGTAAACCATTTAACCCATTACTAGGGGAAACATATGAGGCTGACTTTCCAGATAAAGGCTTTCGATTTTTCTCAGAAAAGGTCAGTCATCACCCAATGATAGTTGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTGTGGAGATAGCAACTTAAAGAGCAAATTTTGGGGTCGGTCAATTCAGCTTGATCCGGTTGGCTTTTTGACTTTGGAATTTGACGATGGTGAAGTATTCCAGTGGAGTAAGGTTACTACATCAATATACAATCTTATATTGGGAAAGCTGTATTGTGATCATTATGGTACAATGCGGATACAGGGAAATCAAGATTACTCATGTAAACTGAAATTCAAGGAACAGTCTATAATTGATCGAAACCCTCACCAGGTTCATGGTATTGTTCAGGACAGAAATGGGAAAATATTGTCTACTTTGCTCGGAAAATGGGATGACAGCATGTATTATATAAATGGAGACTATAGTGGGAAGGGAAAAGGTTATGAATCAATGTCAGATGCCCATTTACTATGGAAGCGGAGCAAGCCGCCCAAGTTCCCCACTAGATACAACTTCACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAGGATAAGCTGCCACCAACTGATTCCAGGTTAAGACCTGACCAAAGGCATTTGGAAAATGGAGAGTATGAGATGGCAAATTCAGAAAAATTGCGACTTGAACAGCGTCAACGTCAGGCTCGGAAAATGCAAGAGAGCGGTTGGGAACCACGGTGGTTTGGTAAGGATAAACAGAGCGGTTCCTACCGCTACTTGGGAGGGTATTGGGAGGCTCGAGAACAAGGAAATTGGAACTCATGTCCTGACATTTTTGGTCAAATTCCTTCTGATCATCTCTTGGACGAAGTTAAAGTTCCTCATGAAATTCATCATAGTCAATCATTAAAAATATGA 2394 0.4495 MHPFCCVSVVSDHSSPITLDMPPIPAAPRSDPAHRTGQALHSLTNGGEGGRAHPLPVPTAVDVRIKDLVGNGISGILHKWVNYGKGWRTRWFVLQDGVLSYYKIHGPDKIIVNSETEKGSKVIGEESARLISRNRNSNHVDRRRKPVGEIHLKVSTIRESRSDDKRFSVFTGTKRLHLRAETPYDRVAWMEALQAVKDMFPRISNSELMAPVDNVAVSTEKLRLRLMEDGVSEEAIRDSEQIMRNEYATLQNQLLLLKQKQVALIDTLRQLETEKVDLENTVVDESQRQLNDQEVSSRLGQEKSSEESGTESEDDNERNDAAEEETDDEDTTFFDTRDFLSSSNSFKSNASDIRVSSFSSDDEGLYAVESEEDVDPSIRSVGFNYPYVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCCEEMEYSYLLDRAYEWGRRGNSLMRILNVAAFAVSAYASTEGRICKPFNPLLGETYEADFPDKGFRFFSEKVSHHPMIVACHCEGTGWKFCGDSNLKSKFWGRSIQLDPVGFLTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNQDYSCKLKFKEQSIIDRNPHQVHGIVQDRNGKILSTLLGKWDDSMYYINGDYSGKGKGYESMSDAHLLWKRSKPPKFPTRYNFTRFAITLNELTPGLKDKLPPTDSRLRPDQRHLENGEYEMANSEKLRLEQRQRQARKMQESGWEPRWFGKDKQSGSYRYLGGYWEAREQGNWNSCPDIFGQIPSDHLLDEVKVPHEIHHSQSLKI* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1351 797 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 778 - -
Vra6g1351 797 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 778 IPR000648 GO:0008289
Vra6g1351 797 MobiDBLite consensus disorder prediction 284 334 - -
Vra6g1351 797 CDD PH_ORP_plant 73 205 - -
Vra6g1351 797 Gene3D - 491 665 - -
Vra6g1351 797 Pfam Pleckstrin homology domain 78 194 - -
Vra6g1351 797 SUPERFAMILY PH domain-like 74 202 - -
Vra6g1351 797 Coils Coil 240 288 - -
Vra6g1351 797 Gene3D - 702 769 - -
Vra6g1351 797 SUPERFAMILY Oxysterol-binding protein-like 400 783 IPR037239 -
Vra6g1351 797 ProSiteProfiles PH domain profile. 70 198 IPR001849 -
Vra6g1351 797 SMART PH_update 71 200 IPR001849 -
Vra6g1351 797 MobiDBLite consensus disorder prediction 284 298 - -
Vra6g1351 797 Pfam Oxysterol-binding protein 405 760 IPR000648 GO:0008289
Vra6g1351 797 MobiDBLite consensus disorder prediction 308 332 - -
Vra6g1351 797 Gene3D - 71 200 IPR011993 -
Vra6g1351 797 Coils Coil 710 730 - -
Vra6g1351 797 MobiDBLite consensus disorder prediction 24 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1351 Vra-Chr6 26377123 26385010 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1351 K20456 - gmx:100817212 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1351 6 26377123 26385010 Vra6g1351 6 26377123 26385010 ECH