Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1345 ATGGCGTTTCATCCTCAAACCATCTTTCCGATCACTTTCCTTCTTGCAATACTTTTATCAGGGCAAAAACCATGCGAGAGCGCCAGAGTTTTCACCATCGTCAACTATTGCAAGGAGACACTGTGGCCGGCGGTGACGCCGGGAGAAAACTTCAACGGCGGCGGTTTCGTCCTCAAACCGGGCCAATCCGCGGTATTCACGGCCCCGGTCAGTTGGAGCGGCCGCATTTGGGCTCGAACCGGTTGCAAATTCGACCAGAACGGAAACGGCCAGTGCCAAACCGGTTCATGCGGCACCACGCTGAAATGTTCGGCCTCGGGAAAAACGCCCGCTTCACTGGCGGAATTCACACTCGCTCAACCCGACTTCTACGACGTTAGCCTGGTGGACGGCTTCAACGTCCCCATCTCCATTAGGCCCATTAACGGAAAGGGAAACTGCTCTTCCGCGGGGTGCGACTCCGACCTCAGAGCTACTTGCCCTAACGAACTGTCCGTTAAGGCTAACGGGAAGACGATTGGGTGCCGTAGCGCGTGTGACGTGTTTAACACGGACGAGTATTGCTGCAGAGGGAACTATGGGAACCCCTCCACTTGCAAACCCACCTTTTATTCCAAGAAGTTTAAGGAAGCTTGTCCCACTTCTTACAGTTATGCGTACGATGATCCAACCAGCATCTTCACTTGTTCTGGAACTGATTATGTCATCGCCTTCTGCTCTTCCAGGAAACGACAGGTATGCACGTACCATAACAACAAGCTTCACTGCAGTGGATCACAAGGGTTGAAATCCTTGATTGGAAGGTGGTGCATCCTAATTATAACTCTGTTTTCGGTTCTTAGTTTATGGAATCGATTCTAG 861 0.5168 MAFHPQTIFPITFLLAILLSGQKPCESARVFTIVNYCKETLWPAVTPGENFNGGGFVLKPGQSAVFTAPVSWSGRIWARTGCKFDQNGNGQCQTGSCGTTLKCSASGKTPASLAEFTLAQPDFYDVSLVDGFNVPISIRPINGKGNCSSAGCDSDLRATCPNELSVKANGKTIGCRSACDVFNTDEYCCRGNYGNPSTCKPTFYSKKFKEACPTSYSYAYDDPTSIFTCSGTDYVIAFCSSRKRQVCTYHNNKLHCSGSQGLKSLIGRWCILIITLFSVLSLWNRF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1345 286 CDD TLP-PA 30 239 - -
Vra6g1345 286 Gene3D Thaumatin 30 239 IPR037176 -
Vra6g1345 286 SUPERFAMILY Osmotin, thaumatin-like protein 30 240 IPR037176 -
Vra6g1345 286 Pfam Thaumatin family 35 239 IPR001938 -
Vra6g1345 286 PANTHER OS03G0233200 PROTEIN 10 253 IPR001938 -
Vra6g1345 286 PIRSF PR5 1 280 IPR001938 -
Vra6g1345 286 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Vra6g1345 286 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Vra6g1345 286 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Vra6g1345 286 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Vra6g1345 286 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Vra6g1345 286 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Vra6g1345 286 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 10 253 - -
Vra6g1345 286 SMART tha2 31 240 IPR001938 -
Vra6g1345 286 ProSiteProfiles Thaumatin family profile. 28 239 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1345 Vra-Chr6 26194656 26196501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1345 28 239 Receptor kinase-like Gene Family AT5G38280 45.133 5.31e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1345 - - gmx:100813659 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1345 6 26194656 26196501 Vra6g1345 6 26194656 26196501 ECH