Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1344 ATGAGAATTAAGGAAGCAAGTCCATTTTTGAGAAGAGTGAGAAACATGGAGGTGCTGAGGGTTCAAACCATTGCTTCAAAAGAGAACGATGGTGCAATACCAGCCATATTTGTTAGGGCAGAAACAGAGCAACCGGGCATGACAACGGTGAAAGGGGTGAACCTTGAGGTGCCGATTATTGATTTTAGCAACCCAAATGAAGAGAAAGTGTTGCATGAGATTGTGGAAGCAAGTAGAGAGTGGGGAATGTTCCAAATTGTGAACCATGAGATTCCTAGCGATGTTATAAGAAAGTTGCAGAGTGTGGGGAAAGAGTTCTTTGAATTGCCTCAAGAAGAAAAAGAGTTAATTGCTAAGCCTGCTGGCTCTGATTCTTTGGAAGGTTATGGCACCAAGCTTCAAAAGGAGATCAATGGCAAAAAAGGGTGGGTTGATCATTTGTTCCATATTGTGTGGCCACCTTCCTCCATCAATTATCATTTCTGGCCAAAGAATCCTTCTTCTTACAGGGAAGTGAACGAAGAATACTGCAAGTACCTACGTGGGGTGGTGGACAAATTGTTCAAAAGTATGTCAAAAGGGTTGGGGCTGGAAGAAGATGAGCTAAAGGAAGTAGCAAATGAAGAAGAAATGCTTTACCTTTTGAAGATCAACTATTACCCACCTTGTCCTCTTCCTGATCTTGTATTGGGTGTGCCACCACACACAGACATGTCCTACCTCACCATTCTCGTACCCAACGAGGTGCAGGGCCTCCAAGCTTCTAGGGATGGTCGATGGTACGATGTTAAGTATGTTCCCAATGCCCTCGTCATTCACGTTGGTGACCAAATGGAGATTCTTAGCAATGGAAAATATAAGGCAGTTTTCCACAGAACTACAGTGAACAAAGACAAGACAAGAATGTCATGGCCAGTGTTCATAGAACCCAAAGCAGAACGTGAGGTTGGTCCTCACCCAAAGTTGCTTAACCAAGATAATCCTCCAAAATACAAGACTAAGAAATACAAGGATTATGCTTACTGTAAGCTCAATAAGATCCCACAGTGA 1050 0.4305 MRIKEASPFLRRVRNMEVLRVQTIASKENDGAIPAIFVRAETEQPGMTTVKGVNLEVPIIDFSNPNEEKVLHEIVEASREWGMFQIVNHEIPSDVIRKLQSVGKEFFELPQEEKELIAKPAGSDSLEGYGTKLQKEINGKKGWVDHLFHIVWPPSSINYHFWPKNPSSYREVNEEYCKYLRGVVDKLFKSMSKGLGLEEDELKEVANEEEMLYLLKINYYPPCPLPDLVLGVPPHTDMSYLTILVPNEVQGLQASRDGRWYDVKYVPNALVIHVGDQMEILSNGKYKAVFHRTTVNKDKTRMSWPVFIEPKAEREVGPHPKLLNQDNPPKYKTKKYKDYAYCKLNKIPQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1344 349 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 19 346 - -
Vra6g1344 349 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 207 310 IPR005123 -
Vra6g1344 349 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE 19 346 - -
Vra6g1344 349 Gene3D - 16 347 IPR027443 -
Vra6g1344 349 Pfam 2OG-Fe(II) oxygenase superfamily 215 310 IPR044861 -
Vra6g1344 349 Pfam non-haem dioxygenase in morphine synthesis N-terminal 57 164 IPR026992 -
Vra6g1344 349 SUPERFAMILY Clavaminate synthase-like 28 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1344 Vra-Chr6 26122797 26126705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1344 54 340 Glycosyltransferase AT5G59530 30.565 7.22e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1344 K05278 - gmx:778157 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1344 6 26122797 26126705 Vra6g1344 6 26122797 26126705 ECH