LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra6g1342	ATGAGGACCGTGGCCGAAGGATCCTTGGTAGAGAGGTCTGACGATGGCGAAAAGGAGAAGAAGAAGAAGCGCCGATCCAATCGTCGATCCAAGCAAAACACTTCCTCGTCTACAGCATCTGAAGCGAATGAGGCCCAGGGGATGCTGCCAGATTCAGGGAAAATTGAAAAACCTACTCATGCATCCACTTCCTTGGAGGGTTCATTGAAGCAGGTCAATGTGGGTTCTTCTAACGAGCAAGGACTATCCAATGCATCAAATGTTGCTTTTACATCAATGCCCCCCATGCATATCAATGAGCAAGTGGAATCTGTTGATTTGCGAATTGTGCCCGTGTATGGTGGAGGAATTGATTCTAAATCATTTTCTGAGCCCGCTGGTTGCAGAGGGTCATCGGGAATTAATAAAAACAAGGACACAGTTCCTTGTGGTCCAATTCGAATTTGTGGCCAGAAATGTATTTTTAGTCCACACTTGTCTTTAGAGGCTGTTGAGAAGGCATTGGAGAAGGGCGATGTTTTTAAAGCTCTCTTTCATGTCAATGCTCACAATCGAGTTGAGGCCTACTGCAAAATTGACGGAGTGCCAACTGATGTTCTCATTAGTGGGATTCCAGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCAGTTAAGATTGATCCCTTGCCATTATGGACAAAAATGAAAGGACCAAATGGGTCTTGTAACAACACTTCAACACAGGAAAGTTCCAACCTTTTCACAGAAGATAACGATGTGGATGGTAAAGGGAAACATAAGGTAGATGCTGATCATTGGTCTGGCCTTTGCGGAAGCTATCCTGGTCAAAACAAGCAAGATGCTGATCAACAATCCATCTCCTATAAAAATGATTCTTTGACTGGAAAAGGAATTGTCTGGGATGATAATACCTCCCAGGGTTCTACTAACCATTTAGATCTACTTGGAGGAGTCAACAATGGCAGCATTAATGGACATCACCATGCTACTACTGATTCCTTAAAGAGCAATTCTTGTAGTGAACAAGTTGAAGTAGTTAATGCTGTGGAAAAGATGTGTTTGTTGGTTAATTCTGTCCCTTCAAAAAGACCAACTGGCAGGGTGGTCTCTATTATCGAGAGATCTCCTCGTCGGGAGGGTATTGTTGGTCATCTTAATGTGAAACAGTGGGCTTCTTATAAGGAAATAACCAAAAAGGACGTCAAGAAGAATAAGAACTTGGTTTCTGATAATGATTACATCCAGCTAATACCAACTGATCCAAAGTTTCCTAATATGATACTTCTTGTTAGAAAGTTACCCGAGTGCATTATAAAAAGGTTGAAAAGTGGTGACATGACAATTGAAATGGATCTGGTTGCTGCACAAATTGATGATTGGGTAGAAGAAAATCCTTTTCCCGAGGCCCACATCTTGCACGTTTTTGGAAGAGGTGGTGAAATTCAGACCCATTTAGATGCAATTTTGTTTCAGAATGCAATCTGTTTTTCTGAATTTCCTCCAGAAGCTATGTCCTGTCTTCCGTGTGTTCCTTGGGAGGTACCTCTGAAAGAAATTCAAAGTAGAAAAGATCTCAGAAATTTGTGCTTATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCTCTGTCAATTGAGAAGTTACCTAATGGGAATTATAGAGTAGGAGTCCACATTGCTGATGTATCATATTTTGTTTTACCTGGGACAGCCTTAGATAGTGAGGCTCAGTCTAGGTCAACAAGTGTATATATGTTGCAAAGGAAGTTACCTATGTTGCCTTCATTATTGTCTGAGAATATTGGGTCACTTAGTCCTGGAGTGGATCGACTTGCTCTTTCTATGCTCCTGGATGTGAATCATGAGGGGGATGTTGTAGACCGTTGGATTGGTCGTTCTGTTATACACTCATGTTGTAAGCTTTCATATGACCATGCCCAGGACATCATTGACAGGGATTTCGATTTTGAAGGTTTAAAGAATACTGAAGATGGCTATCCCAGAGTGTATGGCCATTTTGAATGGCCTGATATTATTATGTGTTTGAAAAGTCTGTATGAAATTTCAAATGTCTTGAAACGCAAGAGGTTTACTGATGGGGCTCTACGGCTTGAGAACCCCAAAGTTGTTATCTTGTTTGATGAGAATGGAGTTCCTTATGATAGTAAGCTTTCTGAAAGGAAAGAATCAAATTTTCTTGTAGAGGAATATATGCTTTTGGCAAATAGAGTTGCTGCAGAAGTCATATGTCGAGCTTATCCTGATGCTGCATTGTTACGGCGACATCCTGAACCTAATATGCGAAAAATGAGAGAGTTTATGACATTTTGTCAGAAGCATGGTTTAGAATTGAACACGACTTCCTCTGGTCAATTCCATTGGTCATTAGAGCAGATCAGGGAAAAGCTCAAGGGTGATCCTGTGCTTTACTATATACTTATTTCTTATGCTACTAAGCCAATGCAGTTGGCTTCTTACTTCTGTAGTGGAGATTTGAAGGATAGTGAAAATGAATGGGGTCATTATGCTTTAGCTGTCCCATTTTACACTCATTTTACATCACCTCTGCGTCGGTATCCAGATATTATTGTTCACCGGACATTACTTGCTACCATAGAGGCTGAGGATTTGTATATGAAGCATCAAAAGGCTTTGCAGGGTCATAAGGAAATGGATATGGCAAAAAGATGTTTCACTGGTATCAATTTTGATAAAAGTGCTGCAGAATCCATCAAGGGAAGGGAAGCACTTACAGCTGCAGCTGTGAAGTATAGTGTTCCAGGTGGTGAAATACTTGCAAATATTGCTGTTCATTGCAATGAAAGAAAGCTAGCTAGTAGAAATGTTAAGGATGCCTGTGATAAACTTTACATATGGTTTCTCCTGAAGAAAAAGGAGGTCTTATTGTCAGAAGCTAGAATTATGGGACTTGGCCCAAGATTCATGTCAATTTACATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGATGTGGAAGGGTTGACTGCAGAATGGCTTGAAACAACATCGACGTTGGTGCTCAGCATGTCAACTACTAATAGGTGTAGTTTTAGGAGGGGCTGGTCTAACAAGTGGAGGGCGATTGAAGAAGTTGCACTGCTTTCTTGTCCATATAACCTGAAAATTACCACGGATAATTCTAACCAGAGTGATGCGGAGACTGAAATTGACCCCTTAGTTTTTCCGCTCACAGTGCATGTTCTTTCAACAATTCCAGTGGCTCTTCATGCTGTTGGTGGTGATGATGGGCCCCTTGATATTGGAGTAAGGCTCTACATGAGCTCCTATTTTGGGTGA	3333	0.4113	MRTVAEGSLVERSDDGEKEKKKKRRSNRRSKQNTSSSTASEANEAQGMLPDSGKIEKPTHASTSLEGSLKQVNVGSSNEQGLSNASNVAFTSMPPMHINEQVESVDLRIVPVYGGGIDSKSFSEPAGCRGSSGINKNKDTVPCGPIRICGQKCIFSPHLSLEAVEKALEKGDVFKALFHVNAHNRVEAYCKIDGVPTDVLISGIPAQNRAVEGDIVAVKIDPLPLWTKMKGPNGSCNNTSTQESSNLFTEDNDVDGKGKHKVDADHWSGLCGSYPGQNKQDADQQSISYKNDSLTGKGIVWDDNTSQGSTNHLDLLGGVNNGSINGHHHATTDSLKSNSCSEQVEVVNAVEKMCLLVNSVPSKRPTGRVVSIIERSPRREGIVGHLNVKQWASYKEITKKDVKKNKNLVSDNDYIQLIPTDPKFPNMILLVRKLPECIIKRLKSGDMTIEMDLVAAQIDDWVEENPFPEAHILHVFGRGGEIQTHLDAILFQNAICFSEFPPEAMSCLPCVPWEVPLKEIQSRKDLRNLCLFTIDPSTATDLDDALSIEKLPNGNYRVGVHIADVSYFVLPGTALDSEAQSRSTSVYMLQRKLPMLPSLLSENIGSLSPGVDRLALSMLLDVNHEGDVVDRWIGRSVIHSCCKLSYDHAQDIIDRDFDFEGLKNTEDGYPRVYGHFEWPDIIMCLKSLYEISNVLKRKRFTDGALRLENPKVVILFDENGVPYDSKLSERKESNFLVEEYMLLANRVAAEVICRAYPDAALLRRHPEPNMRKMREFMTFCQKHGLELNTTSSGQFHWSLEQIREKLKGDPVLYYILISYATKPMQLASYFCSGDLKDSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEDLYMKHQKALQGHKEMDMAKRCFTGINFDKSAAESIKGREALTAAAVKYSVPGGEILANIAVHCNERKLASRNVKDACDKLYIWFLLKKKEVLLSEARIMGLGPRFMSIYIQKLAIERRIYYDDVEGLTAEWLETTSTLVLSMSTTNRCSFRRGWSNKWRAIEEVALLSCPYNLKITTDNSNQSDAETEIDPLVFPLTVHVLSTIPVALHAVGGDDGPLDIGVRLYMSSYFG*	1111

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra6g1342	1110	MobiDBLite	consensus disorder prediction	1	67	-	-
	Vra6g1342	1110	SMART	RNB_2	523	877	IPR001900	GO:0003723\|GO:0004540
	Vra6g1342	1110	SUPERFAMILY	Nucleic acid-binding proteins	152	375	IPR012340	-
	Vra6g1342	1110	PANTHER	DIS3-LIKE EXONUCLEASE 2	22	1108	-	-
	Vra6g1342	1110	SUPERFAMILY	Nucleic acid-binding proteins	366	495	IPR012340	-
	Vra6g1342	1110	MobiDBLite	consensus disorder prediction	236	260	-	-
	Vra6g1342	1110	Gene3D	-	149	248	-	-
	Vra6g1342	1110	MobiDBLite	consensus disorder prediction	31	45	-	-
	Vra6g1342	1110	ProSitePatterns	Ribonuclease II family signature.	844	868	IPR022966	-
	Vra6g1342	1110	MobiDBLite	consensus disorder prediction	7	21	-	-
	Vra6g1342	1110	Hamap	DIS3-like exonuclease 2 [DIS3L2].	18	1085	IPR028591	GO:0000175\|GO:0034427
	Vra6g1342	1110	PANTHER	RIBONUCLEASE	22	1108	-	-
	Vra6g1342	1110	SUPERFAMILY	Nucleic acid-binding proteins	483	967	IPR012340	-
	Vra6g1342	1110	Pfam	Dis3-like cold-shock domain 2 (CSD2)	414	493	IPR041505	-
	Vra6g1342	1110	Pfam	RNB domain	523	875	IPR001900	GO:0003723\|GO:0004540
	Vra6g1342	1110	Gene3D	-	397	481	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra6g1342	Vra-Chr6	26054344	26060492	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra6g1342	K18758		-	gmx:100817387	1790.78

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra6g1342	6	26054344	26060492	Vra6g1342	6	26054344	26060492	ECH