Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1317 ATGGACGAATCGTCGTTGCAATTCGTCTCCGAAATAGGAAGACACCTTGCTCAACGAAATCGTCCCAACAAGGACTTCATCGTCAAATCCCTCAGAAAAGCTGCAAATACTCTGTCTCAGATAAAACAGTCTCCTCAACCGCGGACGGCCAAGGAATTACGAGCTGCAAAGAAACAAGAAGATGCTTTGAAGCCCCTGTCAAATGCTGTGGTTTGTGGTGGTCTGCTTCAACACGCAGATAAGGAAGTTAGACTTCTGGTTGCTATGTGTGTCACCGAGCTCTTTAGACTTATGGCACCCGAACCGCCTTTTGAAGACAAGCATTTGAGGGATGTATTTACACTTATCATTAATTTGTTTGAGGATCTAGCTGATACTGCAAGTCCATTCTTTTCAAAAAGGGTTAAAGTATTGGAGATAATGGCTCAACTAAAGTGTTGTGTGATAATGCTGGAGATTAACTGCCTGGACCTAGTTCTTGAGATGTTCAATATTTTCTTCTCAGTTGTGAGAGATGAACAGCTTCTCACTAGTGCCATGACTTCTATAATGATAAACATTTTGTATGAGAGTGAGGAGGCTTTTCAGCAACTATTAGGAGTGGTTTTACTAAATCTTGTTAAGCAAAAAGGGGATGGAAATTTTGCTGCTGAAAACCTTGCTGCATCGGTCATCAAAACTTGTGCACAAGAAGATGAGCTAAACCTCGTAGCTTGTGGGTTTTTAGCTTCTTGTATACACGACAGAGATGCTATGGGTAGTGGGCTTAAACAATATTACTATGAAATTTTCTCAAAAGTTTTTGAGTGTGCGCCTGAGATGCTTCTGTCTGTCATCCCAAGTTTAATTAAAGAATTATCGGCTGATGAGGTTGATGCTCGGATAAAAGCTGTGAATTTGGTGGGAAAGCTTTTTGCGGTTCAACATCGTGTTGCTCAGAAGTATCCCGATCTTTTTGTGGAGTTTTTGAAAAGATTTTCTGATAAATCTGTGGATGTTAGGATTAGTGCTTTACAATGTGCTAAAGTTTTTTATTTATCAAATCCCTATGATGGCACTGAATCACGTGAAATTATGACTTCTATTGAAGATAGATTATTAGACTCTGATGAACAAGTGAGAAAGCAGGCAGTGTTTGTTGCCTGTGATATTTTTAGTTCAAACCTGAAACTTGTTTCATCCAAATTACTATCTCAAGTTTCTGAAAGACTCCGGGATATAAAGATATCTGTTAGAAAGAGTGCCTTGCAAAAGTTGATAAGGGTATATCGAGATTACTGCAAGAAATGTTACGAAGGTAGCATGAAAATTAGTAATCACTTTGAAGAGATTCCCTGTAAAATTATGTTGCTGTGCTATGATAAAGATTGTAAGGAGTTCAGGTTCCAGAACATGGAATTTGTTCTTGCTGATGATCTATTCCCAGAAGAGCTTCCTATCGAAGAAAGGACAAACCATTGGATACACATGTTTTCTCTTTTCAGTTTTCCTCATGAAAAGGCACTGGATACTATTTTGGCTCAAAAGAGAAGGTTCCAAAATGAAATGAAAAACTATTTGGCTATGAAGAAGAAAATGAAGGAAATTTGTCCTGAAGAAATGCAGAAGAAGATCGATAGCTTGTTTACAAAAATGGCAGCATTCTTCCCGGATTCTCACAAAGCTGAAGAGTGTCTGCATAAGTTAAACCAAATTAAAGATAATAGTGTGTTTAAGTTACTTGAAAAATTGTTGGAGGAACAAGCCTTACCTATGATTGAACAAACTATGAAAGATAAACATCTGGCAATGATTGGAGGCAGCAATCCAACTTATGAGTTTTTACGTCCACTATTCTCTAAATGTTCATCCAACATTTTCAGCTCAGAGCATGTCAGATGCATCTTAGATTATCTTACCAATAATGAAAATGAAAATAGGACTTTAGAGGATTCTTCTGCAAATTTTCTGCTGGCTATTGTTCGATATTTCCCTTCTATGCTGAAAGGCTCGGAAAAACAGTTCTTATTGTTGTTGGAACGGAAAAGTTCTGTTAATGACAAGCTGATTGAAGTTATGGCAAAGGCAGGCTGTCATATGTCTTTCAATCATAGTGATATTTATCCATTTTTAAGGAGAATTTGCTTGGATGGAACACGCAGACAGGCTAAATTTGCGGGGTCAGCAATTGTTGCTTTAAGTTCTGATCAGTCACTTTTTAGAAAGTTGTATGAGGAGCTAATTGATTCCTTATATAGGGAGCGGAATGTCCCTACTATTTTGCAATCTCTGGGATGCATTACACAATATGTTTCCAATTTTGAAACTCAAGTTGAAGAGATCACGTCATATATATTCCAGAAGATCATTCAAATGGAGCATTTGGATGATGGTCATTACGCGACATCCTTTCATGATACTGCTCAATGTAGTGAATTTTGTCAGTTAAAGATTTATTGGCTGAAAACTCTGGTGAAGATTTCTTTGCATTATGAAGGAAGTCATGTTGAGCGTAATATTAATGGATTGTTGGAGATTTCGTCAAAAATGCTACGAGAAAGTGATTATTTTGTAAATACAACTGCTAGCTCCTGTGAGAATGATAAGGCTCATATTAGATTAGCTGCTGCAAAAGCAATCCTTCGTCTTGCTAGGAAGTGGGATTTACATATTACTCCTCAGACTTTTCAGTTTTGTATATCGATTGCAAAGGACTCTTCTTTGTTTGTTAGGAGCACATTTCTTCGGAAGATCCAAAAGTTGTTGAAGGAGCACAAACTACCAATGAGATTTGCATGTGCTTTTGCTTTGGCAGCAACAAATGGCACTGGCGATCAGCAATATCAGAACTACAAGTATATGGCAGAGTTTATAAAGGATTACAGTATATTAGCCCGTAAACGAGAAACTTCTTCTGCTCAAGGATTCATCATTGATTACCCATCATATGTTTTGGTCTTCTTGATTCATGTGCTTTCTCGGAATAATGACTTTCCATTTGAAGTCTGTCCAGACGAAAAAATTTATGCTGATGTTTGCAGTCCACTTTTCTTTATCCTGAAGGCATTAGTTGATATCAATATTGTTGATGGTGACCTGGACATTGTTGATGATGCTATCCTACATATAGTTAGTATTTTTCGAGCAATCAGAAAGGTTGAGGATGCTATTGATGCACAGATGACAACTAAGCTGCATATGCTGGCTGAAATTGGGATATTTACATTAAATGAATTAAGTCATGGTGGAATATCCAAATTGCAAACACCTGGACAAATTTTATTGCCTTCATCATTATATAGAACTAGTTCAAAATGTCTGAAGTCATATTTTGAGGAAAATTTTCTAAGTAGAGTTTTTCAAGCACTTAAGGAATTTACTGTGGCTCATGGACATGCTGAAAAGACTGCAAAAAAATTTCCTAAGCATGGTCATAAGGTTCAACAAGATGTTAAAAAGTCTAATATTGATATTGGTGGTGTACTGGACTTGGCATCTACCAAATCAAATGATTTGTCAAGGAGAGCAATAACAAATGCTAAAATTGCGAAGCCAGACATCCGTTCGGTGAAAAGGAGAAAATGTGTGTCTGGATCTGTTGGTTTGCATGAATGCTCTACAATCGAGAAGCAACAAAAAGTACCATCAAAACATTTTGGGAAGACAATAGAGAGCAATGTGCTTTTGTCAAGTGATTCTATGTGCTCTAAGGGTTCTCTGTATGTATCACATGTGCAAACCCGGAAATCAAAAAGAGCTGCTGCTTGTTTATTGGAGAATGCTGTGACAAGTAGCAAACATATTGTTGAACCTTTCAAATGTCCTAGAACCAAACGGAAAGATACATGTGGCTCAAAGGATGTACTAGAAGATGTTTCAAATAAAATTAATTTCAGCCTCCGTGAATCTGGTGAATATTCTTCTCTTGATGGTGGTAAAAAGGCTGCAGTTACAAGACGCCAAGCTGCCAGAGAGGAAACACCACTGAATAAGGAAAATACAAACGTAAATGCAAGGGGAAAATGCATGGAAACATCAGCTTCAGAAGTTGTCAGAACAAATGCAAATGCTGTTAGAAGAACAAGACGAAAAGTATAA 4077 0.374 MDESSLQFVSEIGRHLAQRNRPNKDFIVKSLRKAANTLSQIKQSPQPRTAKELRAAKKQEDALKPLSNAVVCGGLLQHADKEVRLLVAMCVTELFRLMAPEPPFEDKHLRDVFTLIINLFEDLADTASPFFSKRVKVLEIMAQLKCCVIMLEINCLDLVLEMFNIFFSVVRDEQLLTSAMTSIMINILYESEEAFQQLLGVVLLNLVKQKGDGNFAAENLAASVIKTCAQEDELNLVACGFLASCIHDRDAMGSGLKQYYYEIFSKVFECAPEMLLSVIPSLIKELSADEVDARIKAVNLVGKLFAVQHRVAQKYPDLFVEFLKRFSDKSVDVRISALQCAKVFYLSNPYDGTESREIMTSIEDRLLDSDEQVRKQAVFVACDIFSSNLKLVSSKLLSQVSERLRDIKISVRKSALQKLIRVYRDYCKKCYEGSMKISNHFEEIPCKIMLLCYDKDCKEFRFQNMEFVLADDLFPEELPIEERTNHWIHMFSLFSFPHEKALDTILAQKRRFQNEMKNYLAMKKKMKEICPEEMQKKIDSLFTKMAAFFPDSHKAEECLHKLNQIKDNSVFKLLEKLLEEQALPMIEQTMKDKHLAMIGGSNPTYEFLRPLFSKCSSNIFSSEHVRCILDYLTNNENENRTLEDSSANFLLAIVRYFPSMLKGSEKQFLLLLERKSSVNDKLIEVMAKAGCHMSFNHSDIYPFLRRICLDGTRRQAKFAGSAIVALSSDQSLFRKLYEELIDSLYRERNVPTILQSLGCITQYVSNFETQVEEITSYIFQKIIQMEHLDDGHYATSFHDTAQCSEFCQLKIYWLKTLVKISLHYEGSHVERNINGLLEISSKMLRESDYFVNTTASSCENDKAHIRLAAAKAILRLARKWDLHITPQTFQFCISIAKDSSLFVRSTFLRKIQKLLKEHKLPMRFACAFALAATNGTGDQQYQNYKYMAEFIKDYSILARKRETSSAQGFIIDYPSYVLVFLIHVLSRNNDFPFEVCPDEKIYADVCSPLFFILKALVDINIVDGDLDIVDDAILHIVSIFRAIRKVEDAIDAQMTTKLHMLAEIGIFTLNELSHGGISKLQTPGQILLPSSLYRTSSKCLKSYFEENFLSRVFQALKEFTVAHGHAEKTAKKFPKHGHKVQQDVKKSNIDIGGVLDLASTKSNDLSRRAITNAKIAKPDIRSVKRRKCVSGSVGLHECSTIEKQQKVPSKHFGKTIESNVLLSSDSMCSKGSLYVSHVQTRKSKRAAACLLENAVTSSKHIVEPFKCPRTKRKDTCGSKDVLEDVSNKINFSLRESGEYSSLDGGKKAAVTRRQAAREETPLNKENTNVNARGKCMETSASEVVRTNANAVRRTRRKV* 1359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1317 1358 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 3 1300 IPR039776 GO:0007064
Vra6g1317 1358 SUPERFAMILY ARM repeat 264 935 IPR016024 -
Vra6g1317 1358 Pfam Sister chromatid cohesion protein PDS5 protein 25 1094 - -
Vra6g1317 1358 Gene3D - 217 444 IPR011989 -
Vra6g1317 1358 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 3 1300 - -
Vra6g1317 1358 Coils Coil 509 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1317 Vra-Chr6 25387307 25426951 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1317 K11267 - gmx:100777822 2110.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1317 6 25387307 25426951 Vra6g1317 6 25387307 25426951 ECH