Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1296 ATGGTGGGAGGTGGCAGCTCCAAATCCGACATCTCCTTTGCTGGCACTTTCGCCAGCAGTGCTTTCGCTGCATGTTTCGCCGAGGTATGTACTATTCCTCTGGACACTGCAAAAGTTAGACTTCAGCTTCAAAAACAGCCGGTGATTGGTGATGTGATCGCCTTACCTAAATATAGGGGAATGCTTGGAACCGTTGCAACCATTGCCAGGGAAGAAGGTCTTTCAGCACTTTGGAAGGGGATTGTACCAGGGCTACAACGTCAATGTGTGAATGGAGGTTTAAGAATTGCATTATATGATCCTGTTAAGAGTTTCTATGTTGGACCTGACCATGTCGGAGATGTTCCATTGTCTAAGAAAATTCTTGCTGGATTTACAACCGGTGCTATGGCAATTGCTGTGGCCAATCCAACAGATCTTGTGAAAGTTAGACTTCAATCTGAAGGAAAATTGCCTCCTGGTGTGCCCAGGCGCTACACTGGATCATTAAATGCTTATTCAACAATAGTGAGACAGGAAGGAGTTGGTGCTCTTTGGACTGGGATTGGACCCAACATAACAAGAAATGGTATCATTAATGCTGCTGAATTGGCAAGCTATGATCAAGTGAAACAGACTATTTTGAAAATTCCAGGATTCACCGACAATGTTTTAACTCATCTTCTAGCTGGTCTAGGGGCAGGGTTTTTTGCAGTTTGTGTTGGCTCCCCTGTTGATGTGGTTAAGTCAAGAATGATGGGAGATTCTAGTTACAAAAGCACCATTGATTGTTTCATCAAGACATTAAAAAATGACGGACCTTTTGCTTTTTATAAAGGGTTCATACCAAATTTTGGAAGGCTAGGATCATGGAATGTGATCATGTTTTTAACTTTAGAGCAGGCTAAAAAGTACGTCAAAAGATTAGAATCCGCTTGA 918 0.4248 MVGGGSSKSDISFAGTFASSAFAACFAEVCTIPLDTAKVRLQLQKQPVIGDVIALPKYRGMLGTVATIAREEGLSALWKGIVPGLQRQCVNGGLRIALYDPVKSFYVGPDHVGDVPLSKKILAGFTTGAMAIAVANPTDLVKVRLQSEGKLPPGVPRRYTGSLNAYSTIVRQEGVGALWTGIGPNITRNGIINAAELASYDQVKQTILKIPGFTDNVLTHLLAGLGAGFFAVCVGSPVDVVKSRMMGDSSYKSTIDCFIKTLKNDGPFAFYKGFIPNFGRLGSWNVIMFLTLEQAKKYVKRLESA* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1296 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 298 IPR018108 -
Vra6g1296 305 PANTHER MITOCHONDRIAL UNCOUPLING PROTEIN 1 5 299 - -
Vra6g1296 305 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 5 299 - -
Vra6g1296 305 Gene3D Mitochondrial carrier domain 14 304 IPR023395 -
Vra6g1296 305 Pfam Mitochondrial carrier protein 10 106 IPR018108 -
Vra6g1296 305 Pfam Mitochondrial carrier protein 114 209 IPR018108 -
Vra6g1296 305 Pfam Mitochondrial carrier protein 216 300 IPR018108 -
Vra6g1296 305 PRINTS Mitochondrial brown fat uncoupling protein signature 18 30 IPR002030 GO:0006839|GO:0031966
Vra6g1296 305 PRINTS Mitochondrial brown fat uncoupling protein signature 46 65 IPR002030 GO:0006839|GO:0031966
Vra6g1296 305 PRINTS Mitochondrial brown fat uncoupling protein signature 99 111 IPR002030 GO:0006839|GO:0031966
Vra6g1296 305 PRINTS Mitochondrial brown fat uncoupling protein signature 169 186 IPR002030 GO:0006839|GO:0031966
Vra6g1296 305 PRINTS Mitochondrial brown fat uncoupling protein signature 212 230 IPR002030 GO:0006839|GO:0031966
Vra6g1296 305 PRINTS Mitochondrial brown fat uncoupling protein signature 287 305 IPR002030 GO:0006839|GO:0031966
Vra6g1296 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 105 IPR018108 -
Vra6g1296 305 SUPERFAMILY Mitochondrial carrier 10 294 IPR023395 -
Vra6g1296 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 206 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1296 Vra-Chr6 24858133 24861476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1296 1 305 Miscellaneous Gene Families AT3G54110 79.412 0.0 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1296 K15103 - gmx:100802540 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1296 6 24858133 24861476 Vra6g1296 6 24858133 24861476 ECH