Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1293 ATGTTAAGTGTTAAGGAGTTAGTTGAATCCAGCAGCGTGAGGTCTGTTCCCTCCAACTACATCAACCTTAAAAGCCCCGAAGATTCCATGGTGTATGAAACAGAGAATATTCCTACCATTGATTTTTCTCAACTCACCTCTTCCAATCCCTTGGAGCGCTCCAAGGCAATCCAACAACTCGGCGATGCATGCCGCGATTGGGGTTTCTTTATGCTAATAAATCACGGTGTTTCGGAGACACTAAGGGAGAAGGTGCTTAGGGCAACGCAGAGCTTCTTTGATCTGAGTGAGGAAGAAAAAAAGAAGTACGCAGGAGAGAAGGTGCTTGATCCAATAAGATATGGGACAAGCTTCAATGTGATGGTGGACAAGGCACTTTTCTGGAGAGATTTTCTCAAATGCCATGTTCACCCTCACCTTAATGTTCCTTCCAAACCCACTGGTTTTAGTGAAACTGTGGATGAATACATAAGAAAGAGCAGGGAAGTTGTTGGAGAGTTGCTGAAGGGAATATGTGGAAGCTTGGGCCTGGAAGAAAACTATATACATGAAAGGTTGAATGTAGAATTGGGGGCCCAGATGCTAATTGCCAACTTTTACCCACCATGTCCTAAGCCTGAACTTACGATGGGCCTTCCTGCACATACAGACCATGGGCTTCTGACTATTTTGCTGCAAAACGAGTTTTGTGGGCTTCAAATTCAACACAAGGGCAAGTGGATTCCTGTCAACCCCTTACCCAACTCCTTTCTCGTTAACACTGGAGATCACCTTGAGATACTGACTAATGGGAAATACAAGAGCGTCCTTCATCGTGCAGTAGTGAACATAAAAGGCACAAGAATTTCCATTGCCACAGCACACGGTGCTCCGCTTGAGACTATTGTGGGTCCTGCACCAGAGTTTATTGACTGTGATAATCCAGAAGCATACCGTGCCATCAAATATGGAGATTATATACAGTTTCAGCAAAGTCATGAACTCGACAGAAGGTCCTGCTTGGATCGTATTCGGATTTGA 1020 0.4461 MLSVKELVESSSVRSVPSNYINLKSPEDSMVYETENIPTIDFSQLTSSNPLERSKAIQQLGDACRDWGFFMLINHGVSETLREKVLRATQSFFDLSEEEKKKYAGEKVLDPIRYGTSFNVMVDKALFWRDFLKCHVHPHLNVPSKPTGFSETVDEYIRKSREVVGELLKGICGSLGLEENYIHERLNVELGAQMLIANFYPPCPKPELTMGLPAHTDHGLLTILLQNEFCGLQIQHKGKWIPVNPLPNSFLVNTGDHLEILTNGKYKSVLHRAVVNIKGTRISIATAHGAPLETIVGPAPEFIDCDNPEAYRAIKYGDYIQFQQSHELDRRSCLDRIRI* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1293 339 SUPERFAMILY Clavaminate synthase-like 5 329 - -
Vra6g1293 339 Pfam non-haem dioxygenase in morphine synthesis N-terminal 37 141 IPR026992 -
Vra6g1293 339 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 23 335 - -
Vra6g1293 339 Gene3D - 1 328 IPR027443 -
Vra6g1293 339 PANTHER OS08G0480200 PROTEIN 23 335 - -
Vra6g1293 339 Pfam 2OG-Fe(II) oxygenase superfamily 193 286 IPR044861 -
Vra6g1293 339 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 191 290 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1293 Vra-Chr6 24683244 24687005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1293 37 339 Glycosyltransferase AT5G59530 34.505 1.44e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1293 - - gmx:100799432 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1293 6 24683244 24687005 Vra6g1293 6 24683244 24687005 ECH