Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1279 ATGAGAGAGAACCATCCTTCCACAAACTCCGAGGAAGACCAGCGATCCTCCGTGCTGGATCTGGCGCGAGCCGAAATCACGGAATCCTCCACCTCCAAGACCCGAAACTATGGCGGGTTTCCGGATCCGGCTTCCGGGTCGGGTCCATCGGAGCCGCAGGCTCCGTTCCCGGACCAGGTGCTGGAGAACGTGCTGGAGAACGTGCTCCACTTTCTCTCCTCGCGCCGCGACCGTAACGCCGCCTCATTGGTGTGCCGTTCCTGGTACCGCGCGGAGGCCCTCACCCGATCCGAGCTCTTCATCGGGAACTGCTACTCTCTCTCTCCCGCTCGCGCCACCACGCGTTTCACGCGCGTCAAGTCCGTCACGGTGAAGGGTAAGCCGCGCTTCGCGGACTTCGATCTGATGCCACACGATTGGGGGGCCCACTTCACGCCTTGGGCCAGCGCCCTGGCCCAGGCCTACCCCTGGCTGGAGAAGCTCCATCTCAAACGCATGACCGTCACAGACGACGACCTCGACCTCATCGCCGACTCCTTCTCAGGCTTCCGCGAACTCGTCCTCGTCTGCTGCGAGGGCTTCAGCACTCATGGTCTCGCCTCCGTCGCTGCCAAGTGCAGACTGCTGAGGGTGCTTGAGCTGGTCGAATCTGTTGTGGACTCTGAGGACGAGGAGGAGATAGCAGATTGGATTTTATGTTTCCCCGAGAGCCAAACCAACATGGAGTCTCTTGTGTTTGATTGTGTTGAGTGTCCTATTAATTTCGAGGCTTTGGAGAGTTTGGTGGCTAGGTCGCCTCGTTTGAAGAAGCTTCGGTTGAACCGATATGTTTCCATGGCTCAGCTGCATCGTTTGCTACTTCGAGCCCCGCAGCTTACTCACCTCGGAACAGGCTCCTTCAGTGCTGCTGAGCCCGGGGTGGTTGGTGAGCTGGAACCGGATTACACGGCAGCGTTTGAGGCCTGCAGATCCTTGGTTTGCCTGTCTGGATTCAGGGAGATTTGGGCGGATTACCTTCCCGCGATTTATCCGGTCTGCGCCAATCTGACCTCGTTGAATTTGAGCTATGCCGATGTTAACGCGCAGCAGCTGAAGGCAGTCATTCGCCACTGTCATAAGCTACAGATATTCTGGGTACTTGATTCGATATGTGATGAAGGACTTCAGGCAGTGGCTGCTACTTGCAAGGACTTGCGAGAGCTTCGGGTTTTCCCTGTGGATGCAAGGGAGGATACTGAAGGGCCTGTCTCTGAGGTTGGGTTAGAAGCGATTTCGCAGGGTTGTAGGAAGTTGGAGTCGATTTTGTATTTCTGCCAGAGGATGACTAATGCGGCTGTGGTGGCTATGTCAAAGAACTGCCCAGATCTTGTGGTGTTTCGTCTGTGTATTATTGGGCGGTATAGGCCAGATCATGTGACTCAGGAACCCATGGATGAGGGTTTTGGTGCTATTGTTATGAATTGCAAGAAGCTCACTAGGCTAGCTGTGTCTGGTTTGCTCACTGATCGTGCTTTTGAGTACATTGGGAGGTATGGGAAATCGGTTAGGACACTGTCGGTTGCCTTTGCTGGGGACACCGACACGGGCCTTAAGTATGTGCTTGAAGGATGCCCTAATTTGCAAAAGCTTGAAATCAGGGATAGTCCTTTTGGGGATGGAGCTCTTCGATCTGGTTTGCATCATTACTACAACATGAGATTCCTCTGGATGTCGAGCTGCAAATTGACACGCCAAGCTTGCCAAGAGATTGCACAAGCATTGCCCAACCTTGTTTTGGAAGTGATCAGCAACAGTGTGGAGAATGCAGGTGATGATATTGAGATATTGTACATGTATCGGTCACTTGATGGACCGCGGGATGATGCTCCAGGATTTGTTAACATTCTGCATTAG 1893 0.5388 MRENHPSTNSEEDQRSSVLDLARAEITESSTSKTRNYGGFPDPASGSGPSEPQAPFPDQVLENVLENVLHFLSSRRDRNAASLVCRSWYRAEALTRSELFIGNCYSLSPARATTRFTRVKSVTVKGKPRFADFDLMPHDWGAHFTPWASALAQAYPWLEKLHLKRMTVTDDDLDLIADSFSGFRELVLVCCEGFSTHGLASVAAKCRLLRVLELVESVVDSEDEEEIADWILCFPESQTNMESLVFDCVECPINFEALESLVARSPRLKKLRLNRYVSMAQLHRLLLRAPQLTHLGTGSFSAAEPGVVGELEPDYTAAFEACRSLVCLSGFREIWADYLPAIYPVCANLTSLNLSYADVNAQQLKAVIRHCHKLQIFWVLDSICDEGLQAVAATCKDLRELRVFPVDAREDTEGPVSEVGLEAISQGCRKLESILYFCQRMTNAAVVAMSKNCPDLVVFRLCIIGRYRPDHVTQEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFEYIGRYGKSVRTLSVAFAGDTDTGLKYVLEGCPNLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSSCKLTRQACQEIAQALPNLVLEVISNSVENAGDDIEILYMYRSLDGPRDDAPGFVNILH* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1279 630 Pfam F-box 58 97 IPR041567 -
Vra6g1279 630 MobiDBLite consensus disorder prediction 1 57 - -
Vra6g1279 630 Gene3D Ribonuclease Inhibitor 98 629 IPR032675 -
Vra6g1279 630 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 46 628 - -
Vra6g1279 630 Gene3D - 52 96 - -
Vra6g1279 630 SUPERFAMILY RNI-like 150 605 - -
Vra6g1279 630 MobiDBLite consensus disorder prediction 23 38 - -
Vra6g1279 630 PANTHER F-BOX PROTEIN FBX14 46 628 - -
Vra6g1279 630 SMART LRR_CC_2 537 561 IPR006553 -
Vra6g1279 630 SMART LRR_CC_2 428 452 IPR006553 -
Vra6g1279 630 SMART LRR_CC_2 488 511 IPR006553 -
Vra6g1279 630 SMART LRR_CC_2 180 205 IPR006553 -
Vra6g1279 630 Pfam Transport inhibitor response 1 protein domain 118 163 IPR041101 -
Vra6g1279 630 SUPERFAMILY F-box domain 56 91 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1279 Vra-Chr6 24090810 24094162 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1279 - - gmx:100807836 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1279 6 24090810 24094162 Vra6g1279 6 24090810 24094162 ECH