Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1256 ATGCGTGTCACTATCGATCTAGGGTTTCGGAGCCTGGTCCTCGTCGCCGTGGTCTGCCTCGTCTTGCCGGCGATCAGCTTCGTTCTCCGTCGCAGGTTGCGGCGCGCGGAGGCCAGGGCGGAGGAGATCAAGCGGCTGCTTGTTCTCGCCGAGGAGGAGACCGTTAGGGCCGAGACCGAGGCTTCGTATTACCGGTACGGGGTCGTTTCGGCCCCGAAGAACAAAGTATGCGCCGTGTGTTTCTCTCCCACCACTACACGTTGCGCTAGGTGCAAAGCGGTTCACTACTGTTCTGGAAAGTGCCAAATTGTTCATTGGCGTCAAGGTCACAAAGAAGAATGCCATCCTGCCATCGCAACTTGCCAGTCTGATGACTTGGTTAGTGATCTTGGAAAGAACGTGGCAGATCCTGATGCTCGCAGAATCCATGAACAGAGGTCTCAGACTGAAAGCACAAAGTATGCAACAGCATTTGAGAATCCCTTGTTGTCTGAAAAGAGCCGTTCTAATATTTCACGAGCAAATGGTGATAGTGCAAGAGATGACTCTCTTCAAGAGGGAAATGTTACAGGCTCTAATTCTGAATTATCCAGTAATTCATTTTCTGGATTCTCAGCATCCACCGGTGCCAGTGAATCATCTGATGATTCTTCTGTCTGTGAGAGTGTCATCTCAAATGAACACGATAGATCTGAGGGACATATTTTTGTGAATCACGCCCATGACACTTCTGATACCACTTCAAGTCATAGCAACATTGATGAATCCATTCCATTATCACCTAAGTTTGTTAGCTTGGTCGATTCAGTAGATGATTATCCAGAAATGCATAAATTATATCAAGTTACACCTGGTTCGGGAAAAGAAGAGAGTAAGCTCACATCATCAGATAGCAGTTCTGGTTTGCGTATGCGGAAAAGATCAACAATTGAGCCTTCCACAGTGTCTTCTGGATTCAGGAATGAAACACTTGATTCAACAAGGTTAAAAGATGACTCTAATAGTGACCATCGTCCATCCCAGGGTGATTCTTCTCCAAAGTCAGTTGAGAACAATATGCTGGGATCATCATCTTCAGAGAAAAATATAGCTGATTCTTCAGGTTGTGCCGATGCTGTGAGCGTCCATAATTTGCAAACAGTTGGTTCTAGGGTATCAAATCATGTTATCAACCCTAGTAGCACCTTGGAGTTAGCTGAAAGTATACGTCAGTCATTTGCTGATACGAAATGTGGGAATAAAGGCATCCAGTCTGGAACTGTTACTTCATCTAGGGTTGTTGGCTCTCCAAAGTCTAAGAATGACCTAGAAACATCTGTCCTGAAAGCTTCTGATCAGTTTAGAGGATCAAAATCATCTAAACCTTTCCCATTAGCAGTTGGGAGTAATATCACTGGAAAATATAGTGACAAGGGTCATTTTCCATATGATTTGTTTGTCAAGCTTTTTAACTTGAACAGAGTGCAGTTGCAACCATTTGGTCTCGTAAACTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCTTTTACACCACCCCTGACTGCTTATTTACTTCAAGGACTTCATTCTAAATCATGTGCAAATAAAAAGTGGTGTTTCACTTGTGAGTTTGAAAGTTTGATTTTGAAGTCAAAAGACACAAAATCTCCCATCTCACCTGTGGGCTTACTCTCTCAACTACAGAATATTGGGAGTCAACTTGGTAATGGAAGGGAAGAAGATGCACATGAGTTTCTAAGGCTTGCTGTTGAGACAATGCAATCTGTCTGCCTTATGGATTCTGGGGATAAAACATCAGACTCATTAAAAGAGGAAACCAATTTAATGGGCCTAACTTTTGGAGGATATCTTCAATCAAAGATAAAATGCATGAAGTGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGATGGGGAGATAGCAACCCTGGAGGATGCCCTTCGACAGTTTACAACTGCTGAGACTCTGGATGGGGAAAACAAGTACAACTGTGTCAGGTGCAAGTCTTACGAGAAGGCTAAGAAGAGGATGACAGTTTTGGAGGCACCTAATGTTCTTACAATTGCATTAAAGAGATTTAAGTCAGGAAAATTTGGGAAGCTCAATAAACCTATCCAGTTTCCTGAAATACTTGACTTGGCACCTTTTATGAGTGGGACTAGTGATTTGGCTATATACAGGCTATATGGGGTAGTTGTTCACCTGGATACTATGAATACTACTTTTTCGGGTCACTATGTTTGCTATGTGAAGAATTTTCAAGGCAGGTGGTTCAAGGTTGATGATAGCGTGGTGACATCTGTTGAATTGGAAAGCGTCTTGGCAAAAGGAGCATACATGCTTTTCTATGCAAGGTGCTCACCTAGGGCCCCTAGATTAATCAGGAACAGTATAGTATCTTCAGATTTAAAATGGAAAGTCAATGGAAAAACTGCCGTAGTGAAGGGACGACTATCTACTGTTTCTGGTGCTGGAGTTAATTTGACTTCTGTAGATGGTTCACCTTCCTTTGATGTCTATTCAAAGTTTCTCCGCCAGAGAAGGATTTTGGAAGAAGATTCATCAAGTGATAATTCATCCCTTATAAGCAGCAATTCTGACGAAGGTTCTTGCAGTACAGATAGCACGAGTGATTCAACCAGTACGGATGACTTTGCTGATTATATTTTTGGTGATTTGGGACGCGGCTCAGGCAGCATGTTTAGAAATTCAGACTCCAAGATTGCCCCTTCATTGTCGTCTTCTCCCCACTCTAGATATTTTCCCTCTTTTGATATTTGA 2814 0.43 MRVTIDLGFRSLVLVAVVCLVLPAISFVLRRRLRRAEARAEEIKRLLVLAEEETVRAETEASYYRYGVVSAPKNKVCAVCFSPTTTRCARCKAVHYCSGKCQIVHWRQGHKEECHPAIATCQSDDLVSDLGKNVADPDARRIHEQRSQTESTKYATAFENPLLSEKSRSNISRANGDSARDDSLQEGNVTGSNSELSSNSFSGFSASTGASESSDDSSVCESVISNEHDRSEGHIFVNHAHDTSDTTSSHSNIDESIPLSPKFVSLVDSVDDYPEMHKLYQVTPGSGKEESKLTSSDSSSGLRMRKRSTIEPSTVSSGFRNETLDSTRLKDDSNSDHRPSQGDSSPKSVENNMLGSSSSEKNIADSSGCADAVSVHNLQTVGSRVSNHVINPSSTLELAESIRQSFADTKCGNKGIQSGTVTSSRVVGSPKSKNDLETSVLKASDQFRGSKSSKPFPLAVGSNITGKYSDKGHFPYDLFVKLFNLNRVQLQPFGLVNCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFESLILKSKDTKSPISPVGLLSQLQNIGSQLGNGREEDAHEFLRLAVETMQSVCLMDSGDKTSDSLKEETNLMGLTFGGYLQSKIKCMKCGGKSERQERMMDLTVEIDGEIATLEDALRQFTTAETLDGENKYNCVRCKSYEKAKKRMTVLEAPNVLTIALKRFKSGKFGKLNKPIQFPEILDLAPFMSGTSDLAIYRLYGVVVHLDTMNTTFSGHYVCYVKNFQGRWFKVDDSVVTSVELESVLAKGAYMLFYARCSPRAPRLIRNSIVSSDLKWKVNGKTAVVKGRLSTVSGAGVNLTSVDGSPSFDVYSKFLRQRRILEEDSSSDNSSLISSNSDEGSCSTDSTSDSTSTDDFADYIFGDLGRGSGSMFRNSDSKIAPSLSSSPHSRYFPSFDI* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1256 937 Pfam MYND finger 77 114 IPR002893 -
Vra6g1256 937 Gene3D - 67 120 - -
Vra6g1256 937 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 494 509 IPR018200 GO:0004843|GO:0006511
Vra6g1256 937 MobiDBLite consensus disorder prediction 915 937 - -
Vra6g1256 937 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 19 937 - -
Vra6g1256 937 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Vra6g1256 937 MobiDBLite consensus disorder prediction 287 323 - -
Vra6g1256 937 MobiDBLite consensus disorder prediction 866 891 - -
Vra6g1256 937 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 937 - -
Vra6g1256 937 Gene3D Cysteine proteinases 486 806 - -
Vra6g1256 937 SUPERFAMILY Cysteine proteinases 490 800 IPR038765 -
Vra6g1256 937 Pfam Ubiquitin carboxyl-terminal hydrolase 493 794 IPR001394 GO:0004843|GO:0016579
Vra6g1256 937 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Vra6g1256 937 MobiDBLite consensus disorder prediction 915 931 - -
Vra6g1256 937 MobiDBLite consensus disorder prediction 324 338 - -
Vra6g1256 937 MobiDBLite consensus disorder prediction 149 221 - -
Vra6g1256 937 MobiDBLite consensus disorder prediction 339 365 - -
Vra6g1256 937 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 493 797 IPR028889 -
Vra6g1256 937 MobiDBLite consensus disorder prediction 137 222 - -
Vra6g1256 937 SUPERFAMILY HIT/MYND zinc finger-like 73 117 - -
Vra6g1256 937 Coils Coil 33 60 - -
Vra6g1256 937 MobiDBLite consensus disorder prediction 280 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1256 Vra-Chr6 22954658 22964224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1256 474 801 Miscellaneous Gene Families AT4G31670 51.212 1.98e-121 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1256 K11855 - gmx:100782303 1280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1256 6 22954658 22964224 Vra6g1256 6 22954658 22964224 ECH