Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1243 ATGGCTTCTCCTACGCATCGCACGCGCCTCGATCAGTTTTACGTGTCAAAGAAAAGGAAAGCTGAGGCGCCGGTTCGTAAAGCGGGAAGATCCGAGAAAGGTGCCAGGCAAGGGGCTGACGCGTCTCCGAGTTCCAAAGGCACTTTGGACGGTTACTTGATTGCCTCGCAGGATGGAGATGGTGACGGTAACAGTGCCACCGCCCCAAACACCACAGTTAAGAGAAATTTGGCATCAGAGATCGGTACTTCTCTTGCCAATGGACATACTAAGCACACTGTTTTATCGGCTCAAGGGTTTGGTGATTCTGAAACTAGTGGGCCGAGTGAATTCGGACAGAGTGCCGCGAAATTGGAGCTCGAACAGTTTGCAGCTGGCTTTTTGTCTTTGTATTGCAGTGAATTGCATCCCAGTGTGGATTTCCCTTCAGAGATGAAAGTGGATGAACACAAGAGTCATGGTACTGTGGCAGAGGGACATAGTTGTTTACCACAGAAGAGTAAGTGCACTGCCAGAGAGCCAGGTTTTGGTGTTGAAAATGTATCATTAAATGTCAAGATTGACGAAGACGTCAAGTCTGGTGTTGTTGGTAATAATACTATGGGATATGTTCCTATCTCTTGTTCGAAGGTTTCTGGTTGTGGTGACACTGCTGCCTTTGAGACAGGCTTTAGAAAGTGTAGTAATACGCCTAAAATGTCTAGGAATATGGCTGAATGCTATACACCAGGGTCTTTGATTGTTAAAGCCAGGGTTAAGGAGACTCCAAAGTCAGTACACGGAAGCTCATCATTTTCACCTGGAGAGGCATTTTGGAATGAGGCAATTTTACTTGCTGACAGTTTGTGTGTTCCCATGAGTAATGATCCTTCTAAGGCTATGGGGGAAAGTAATGTGGTGGAAGATGGACCCGAGATGAAGAACTCATGCAATTTACAAAATTATGATGGCAAGCCAAGGAAAATATTAGATCAAAGTAAAAGCAGAATCCGGAATATGGAAACAGGCACACCTTTTGGGTTAGTGGGGATGCACACAAAAGATTCTGTGAAAGAAGCATCCAGCCTTCCCGTGAAACATTTTGATTTTTCATTTGAGGACAACAGTTTAGAAGAAAATACCAAGCAAAATGGTCATGGTGATCAGGGCAATGTTGCTTACATGGCTTGTAAACAGTATGAATCAGGTCCTACCACAAGTCATACTTATGAAAAGAAGAATGAAATACAAGAGAAGACTTTAGTAAATAAATTACGAAACAGAAATCGTCATAGTAATGTTAGTATGACATCTAGTCCACCCCACAATGAGGTCAGGACACCAATCAGTGCACAGGAAACTAATGAAGCAAATACTCCTTCAACTAGTGTATCGTTTAATGATCATTTTGACCTAAATAGCTGGCTTCCTCCTGAAATATGCAACATATATAGGAAGAAAGGAATATCAAACCTTTACAATTGGCAGGTTGATTGCCTTCGAGTGGATGGTGTCGTACAGAGAAGAAATCTTGTATATTGTGCTTCTACAAGGTTTCATTTACAGAGACTGCTGGAGTCTCAATTTTGTGCTGGTAAAAGTTTTGTTGCTGAGATCTTAATGTTGCGGAGGGTGATAACAACTGGAAAAATGGCGCTACTTGTTCTTCCATATGTATCAATTTGTGCAGAAAAGGCAGAACACCTCGAACGTCTCCTAGAGCCACTTGGTAAACATGTTCGTAGTTATTATGGAAACCAAGGTGGTGGAACACTTCCTAAAGATACTTCTGTAGCTGTCTGCACAATAGAGAAGGCAAACTCACTAATTAATAAATTGTTGGAAGAGGGTCGTCTGTCAGAAATGGGAATTATAGTGATTGATGAACTTCACATGGTTGGTGATCCCAGAAGAGGCTATCTTCTAGAACTTATGTTGACAAAGCTTCGTTATGCAGCAGGGGAAGGTATTCCAAAGTCAAGTGATGGAGAAAGTTCAGGTGGAAGCAGTGACAAAGCTGATCCTGCACAGGGTCTGCAAATTGTGGGAATGAGTGCAACAATGCCAAATGTTGCAGCAGTTGCTGACTGGCTTCAAGCAGCACTGTACCAGACAGAGTTCCGGCCAGTTCCACTGGAAGAATATGTAAAAGTTGGTAATTCCATTTACAGCAAAAATATGGAACTTTCTAGAACAATCTCAAAAGTTGCTGACCTTGGAGGTAAAGATCCAGATCATGTTGTTGAACTATGTAATGAGGTTGTTCAAGAGGGACAATCAGTGTTAATATTTTGCTCTAGCCGGAAGGGTTGTGAATCAACTGCAAGGCACATTGCAAAGTTCCTTAAAAGATTTACTGGTGATGTTAATGGTTGTGAGTTTGCTGATATTGGTTCTGCTATTAATGGCTTGAGAAAGTGTCCAGGTGGGTTGGACCCCATATTGGAGGAAACTCTTCCATCTGGTGTTGCATTTCATCATGCTGGCCTTACGGTTGAAGAGAGAGAGATTGTTGAAACCTGTTATCGGAAGGGTCTTATACGTGTTTTAACTGCCACATCAACCTTAGCAGCTGGGGTAAATCTGCCAGCCAGGAGAGTGATTTTCCGCCAACCTAGAATTGGTTGTGATTTTCTAGATGGGACGAGGTACAAACAGATGGCTGGTCGAGCTGGTCGAACTGGAATTGATACAAAAGGAGAAAGTATACTTATCTGTAAACCAGAAGAAGTGAAAAAAGTTACAACACTTCTTAATGAAAGCTGTCCTCCTTTACATTCTTGTTTGTCAGAAGACATGAATGGAATGACACATGCAATCTTAGAAGTAGTGGCTGGAGGAATTGTTCAAACTGCCAGTGATATTAACCGTTATGTTAGATGTACTCTTTTGAATTCTACAAAATCATTTCAAGATGTAGTAAAATCTGCACAAGAATCCCTTAGATGGTTGTGCCAAAGAAAATTTCTTGAATGGAATGAAGATACTAAACTGTATAATACCACACCTCTTGGACGAGCATCTTTCGGAAGTTCTCTTTGTCCAGAAGAATCACTTATTGTGTTAGCTGATCTCTCAAGGGCAAGGGAAGGATTTGTCCTTGCATCTGACTTACATTTAGTTTACTTAGTGACACCAATCAATGTTGATGTGGAGCCAGATTGGGAATTGTTCTATGAGCATTTTGTGAGATTGTCTCCTCTTGACCAGTCGGTTGGCAATCGAGTAGGTGTGACGGAACCATTCTTGATGCATATGGCGCATGGTGCACCACTACGCGCTTGTAACAAGTCAAAACATAATACAAGATCATTGCACTCTCAACAAAGAAACCGACCTGGGATTTCCAATTCAACAACCAACTATGATGATCAAACACTTCGTATTTGTAGAAGATTCTATGTTGCACTCATTTTGTCACTTCTAGTTCAGGAAACTCCTGTGGGTGAAGTTTGTGAAGCATTCAAAGTTGCCAGGGGAATGGTCCAATCCTTGCAAGAGAATGCTGGTAGGTTTGCATCTATGGTTGCTGTGTTTTGTGAGAGACTTGGTTGGCAAGATCTTGAAGGCTTAGTTGCTAAGTTTCAAAATCGTGTATCTTTTGGAGTTAGAGCAGAGATTGTAGAACTTACCACCATTCCCTACGTGAAAGGTTCCCGAGCCAGATCACTCTATAAAGCAGGTTTACGTACACCTCTTGCAATTGCTGAAGCATCCATTCCAGAGATAGTAAAAGCAGTTTTTGAAAGTTCTTCGTGGGCCACAGAAGGTTCTGCCCAAAGGAGCTTTCAATTTGGGTTAGCAAAAAAGATAAAGAATGGTGCACGCAAGATTGTTCTTGATAGAGCTGAGGAGGCTAGTAATGCTGCTTTCTCAGCCTTTAAGTCTCTTGGGTTCAGTGTACTACAGTTTGCTCCTCGCATATTATCTACTGTTACTCATGATTCTATCCGCCAAGAAGCTGGTAGTACCTCCGGAAGTGACACGACTGACACTAATCATAATTTTGTTGATGCAAATCACACGGTTAATTCTAATAAGTTTACTTCAGATAAAGAAAGAGAAGAACTAATTAAATTATCTGTTAGTGGTGCTCTGGCTTCTGTGGAAGGAAAATCACGCAACAGGATGCTATGTAGCTTGTCCACTTTTCCTGTTGCTGGATCTACAATGGATGAGCACAACGGGACTTTTGACCTTGCTAAAAATCTAGACATGTCCAACTTCTCTGCTCCATTTCAAGAACCAAAGGATAAATCTTCTGTACAAGATGGCTGCCATGCTCATTGTACAGAGGAACAGCTTAAGAATGAAAATTTGGCTAGTGGTAATTCTGGTTGTTCAAGTAAGAAAGGTCCCATTAATGCAGTTAGTTGTCCGGGTGGGCTTGATTCATTTTTGGATATATGGGACACTGTGCCAGAGTTCTACTTTGATATCCATTACATCAAACGTGTGGAATTGCACTCTGCTGCCCCCTTTGAGATATGTGGCATAGCTGTTTGTTGGGAAAACTCTCCTGTGTATTACGTTAATCTTCCAAGAGATATTCTGTTTTCTGACAAAGCAAAAGATGACTGTTTATCCATGAGTACATGCAGTGATAAACAGAAAGTTTCATCTTCTAAGTGTAACAAAGATTTAGAGATTGCTAGACATAGGTGGAGCAGAATTAGTAAAATAATAGGGAAAAGAAATGTCAGAAAGTTCACCTGGAATTCGAAGATTCAGATTCAGGTGCTGAAAAGTCCTGCATTTCCTGTTCAGAGATTCAGAGGTTTGGACATACCCGGAACAAGTGTGAACCTTGAAGTTATAGACAATTCATATGTGTTATTTCCCCCTATTCATGTTCAGGATGCAATTGATCTATGTATCGTGGCTTGGATTCTTTGGCCTGATGAAGAGAGTAGCTATACTCCAGACCTTGATAAGGAGGTGAAGAAGAGGTTATCCTCTGAGGAAGCTGCAGTTGCCAATCAGAGTGGTAGATGGAGGAATCAGATGAGAAGGGCTGCTCATGATGGTTGCTGTCATCGGGTTGCTCAAACACGGGCATTATGTTCTGTTCTTTGGAAATTACTTGTTTCTGAAAATCTTGCTGAAGTGCTTATAGGAATAGAAATCCCATTGGTGAATGTTCTTGCTGACATGGAGCTTTGGGGAATTGGTGTTGATTTGGAGAGATGCATCCAGGCTCGTAAATTGTTGGTTAACAGACTAAAGCATCTTGAAAAGGAAGCTTATAAGCTGGCTGGCATAACATTTTCATTAAATATGCCAGCAGATATAGCAAAAGTGCTGTATGAACACTTGAAGCTGCCCATACCTAATGTGCAAAATAAGGGAAAAAAACATCCGAGTACTGGCAAACACTGTTTGGATGCATTGAGGCATGAACATCCCATTGTTCCAGTCATTAAAGAACATCGAACAATGGCAAAGCTGTTGAATTCTACGCTAGGATCAATTTGTTCTCTGGCTAGGCTATCTGTAAGCACACAAAAGTATACAATACATGGTCATTGGTGCCAGACATCCACAGCAACTGGTCGGCTTTCAATGGAGGAACCTAATCTTCAGTGTGTTGAGCATACGGTACATTTCAAAATAAAAGAGGAGGAAAATGAAGGTGATGCTGACGAGAGTCATTGTAGTATTAATGCTCGTGATTTCTTTGTTCCCACTCAGGAGAACTGGTTACTGTTAACAGCGGATTATTCTCAGATAGAATTGAGATTGATGGCACACTTCTCTAAAGACTCTTCTCTTGTTGAACTTCTCAGTAAACCTGATGGTGATGTCTTTACAATGATGGCAGCAAGATGGACTGGGCGTTCAGAGGTCTCTGTGGATTCTCAGGAGCGAGAGCATACCAAAAGGATGTTGTATGGTATTCTTTATGGTATGGGTGTCAATAGCCTTGCAGAACAACTGGATTGCACTGCTGATGAAGCTGCTGAAAAGATTGCTAATTTCAAAAGCTCTTTTCCTGGTGTTGCTTCCTGGCTTCGTGAAGCTGTTGCGTCTTGTCGTAGTAAAGGATATGTGGAGACTCTAAAGGGAAGAAAACGGTTTTTGTCAAAAATAAAATTTGGCAGCAGAATAGAAAAATCAAAAGCTCAAAGGCAAGCTGTAAACTCCATTTGTCAGGGATCTGCGGCTGACATAATTAAAATTGCAATGATAAGAATTTACTCTGAAATTGCCATTGGATTTGATAGTCTGGATTCCAGTTCTTCTGTTACAACCAAGTTTCAGATGCTTAAAGATCGTTGTCGGATTCTGTTACAGGTACACGATGAATTAGTGTTGGAAGTTGATCCTTCTGTTATAAAAGAAGCAGCCCTATTATTGCAGACAAGCATGGAGAATGCAGTTTCACTTCTTGTTCCTTTGCGTGTTAAACTTAAGGTTGGAAGAACATGGGGATCTTTGGAGCCATTTACGTCTGATAAAATTCAAGGATGA 6450 0.413 MASPTHRTRLDQFYVSKKRKAEAPVRKAGRSEKGARQGADASPSSKGTLDGYLIASQDGDGDGNSATAPNTTVKRNLASEIGTSLANGHTKHTVLSAQGFGDSETSGPSEFGQSAAKLELEQFAAGFLSLYCSELHPSVDFPSEMKVDEHKSHGTVAEGHSCLPQKSKCTAREPGFGVENVSLNVKIDEDVKSGVVGNNTMGYVPISCSKVSGCGDTAAFETGFRKCSNTPKMSRNMAECYTPGSLIVKARVKETPKSVHGSSSFSPGEAFWNEAILLADSLCVPMSNDPSKAMGESNVVEDGPEMKNSCNLQNYDGKPRKILDQSKSRIRNMETGTPFGLVGMHTKDSVKEASSLPVKHFDFSFEDNSLEENTKQNGHGDQGNVAYMACKQYESGPTTSHTYEKKNEIQEKTLVNKLRNRNRHSNVSMTSSPPHNEVRTPISAQETNEANTPSTSVSFNDHFDLNSWLPPEICNIYRKKGISNLYNWQVDCLRVDGVVQRRNLVYCASTRFHLQRLLESQFCAGKSFVAEILMLRRVITTGKMALLVLPYVSICAEKAEHLERLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINKLLEEGRLSEMGIIVIDELHMVGDPRRGYLLELMLTKLRYAAGEGIPKSSDGESSGGSSDKADPAQGLQIVGMSATMPNVAAVADWLQAALYQTEFRPVPLEEYVKVGNSIYSKNMELSRTISKVADLGGKDPDHVVELCNEVVQEGQSVLIFCSSRKGCESTARHIAKFLKRFTGDVNGCEFADIGSAINGLRKCPGGLDPILEETLPSGVAFHHAGLTVEEREIVETCYRKGLIRVLTATSTLAAGVNLPARRVIFRQPRIGCDFLDGTRYKQMAGRAGRTGIDTKGESILICKPEEVKKVTTLLNESCPPLHSCLSEDMNGMTHAILEVVAGGIVQTASDINRYVRCTLLNSTKSFQDVVKSAQESLRWLCQRKFLEWNEDTKLYNTTPLGRASFGSSLCPEESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEPDWELFYEHFVRLSPLDQSVGNRVGVTEPFLMHMAHGAPLRACNKSKHNTRSLHSQQRNRPGISNSTTNYDDQTLRICRRFYVALILSLLVQETPVGEVCEAFKVARGMVQSLQENAGRFASMVAVFCERLGWQDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARSLYKAGLRTPLAIAEASIPEIVKAVFESSSWATEGSAQRSFQFGLAKKIKNGARKIVLDRAEEASNAAFSAFKSLGFSVLQFAPRILSTVTHDSIRQEAGSTSGSDTTDTNHNFVDANHTVNSNKFTSDKEREELIKLSVSGALASVEGKSRNRMLCSLSTFPVAGSTMDEHNGTFDLAKNLDMSNFSAPFQEPKDKSSVQDGCHAHCTEEQLKNENLASGNSGCSSKKGPINAVSCPGGLDSFLDIWDTVPEFYFDIHYIKRVELHSAAPFEICGIAVCWENSPVYYVNLPRDILFSDKAKDDCLSMSTCSDKQKVSSSKCNKDLEIARHRWSRISKIIGKRNVRKFTWNSKIQIQVLKSPAFPVQRFRGLDIPGTSVNLEVIDNSYVLFPPIHVQDAIDLCIVAWILWPDEESSYTPDLDKEVKKRLSSEEAAVANQSGRWRNQMRRAAHDGCCHRVAQTRALCSVLWKLLVSENLAEVLIGIEIPLVNVLADMELWGIGVDLERCIQARKLLVNRLKHLEKEAYKLAGITFSLNMPADIAKVLYEHLKLPIPNVQNKGKKHPSTGKHCLDALRHEHPIVPVIKEHRTMAKLLNSTLGSICSLARLSVSTQKYTIHGHWCQTSTATGRLSMEEPNLQCVEHTVHFKIKEEENEGDADESHCSINARDFFVPTQENWLLLTADYSQIELRLMAHFSKDSSLVELLSKPDGDVFTMMAARWTGRSEVSVDSQEREHTKRMLYGILYGMGVNSLAEQLDCTADEAAEKIANFKSSFPGVASWLREAVASCRSKGYVETLKGRKRFLSKIKFGSRIEKSKAQRQAVNSICQGSAADIIKIAMIRIYSEIAIGFDSLDSSSSVTTKFQMLKDRCRILLQVHDELVLEVDPSVIKEAALLLQTSMENAVSLLVPLRVKLKVGRTWGSLEPFTSDKIQG* 2150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1243 2149 MobiDBLite consensus disorder prediction 11 34 - -
Vra6g1243 2149 MobiDBLite consensus disorder prediction 1311 1332 - -
Vra6g1243 2149 Gene3D - 468 702 IPR027417 -
Vra6g1243 2149 Gene3D Taq DNA Polymerase; Chain T, domain 4 1715 1828 - -
Vra6g1243 2149 Gene3D - 1841 2136 - -
Vra6g1243 2149 Pfam DEAD/DEAH box helicase 523 683 IPR011545 GO:0003676|GO:0005524
Vra6g1243 2149 SUPERFAMILY DNA/RNA polymerases 1693 2139 IPR043502 -
Vra6g1243 2149 Pfam Helix-turn-helix domain 893 984 IPR046931 -
Vra6g1243 2149 MobiDBLite consensus disorder prediction 1091 1112 - -
Vra6g1243 2149 PANTHER DNA POLYMERASE THETA 485 2144 - -
Vra6g1243 2149 CDD DEXHc_POLQ-like 469 702 - -
Vra6g1243 2149 Pfam Helicase conserved C-terminal domain 739 888 IPR001650 -
Vra6g1243 2149 CDD DNA_pol_A_theta 1715 2139 - -
Vra6g1243 2149 SMART helicmild6 806 888 IPR001650 -
Vra6g1243 2149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 705 IPR027417 -
Vra6g1243 2149 PRINTS DNA-polymerase family A (pol I) signature 1832 1854 IPR002298 GO:0003887|GO:0006261
Vra6g1243 2149 PRINTS DNA-polymerase family A (pol I) signature 1949 1974 IPR002298 GO:0003887|GO:0006261
Vra6g1243 2149 PRINTS DNA-polymerase family A (pol I) signature 1986 1997 IPR002298 GO:0003887|GO:0006261
Vra6g1243 2149 PRINTS DNA-polymerase family A (pol I) signature 2008 2019 IPR002298 GO:0003887|GO:0006261
Vra6g1243 2149 PRINTS DNA-polymerase family A (pol I) signature 2087 2100 IPR002298 GO:0003887|GO:0006261
Vra6g1243 2149 MobiDBLite consensus disorder prediction 1 70 - -
Vra6g1243 2149 SUPERFAMILY Sec63 N-terminal domain-like 1105 1232 - -
Vra6g1243 2149 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 934 IPR001650 -
Vra6g1243 2149 Pfam DNA polymerase family A 1722 2137 IPR001098 GO:0003677|GO:0003887|GO:0006260
Vra6g1243 2149 Gene3D - 1448 1712 IPR036397 GO:0003676
Vra6g1243 2149 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 507 699 IPR014001 -
Vra6g1243 2149 Coils Coil 1720 1740 - -
Vra6g1243 2149 MobiDBLite consensus disorder prediction 650 669 - -
Vra6g1243 2149 SMART polaultra3 1879 2104 IPR001098 GO:0003677|GO:0003887|GO:0006260
Vra6g1243 2149 Gene3D - 1075 1219 - -
Vra6g1243 2149 Gene3D - 1903 2047 - -
Vra6g1243 2149 MobiDBLite consensus disorder prediction 419 454 - -
Vra6g1243 2149 CDD SF2_C_Ski2 701 900 - -
Vra6g1243 2149 Gene3D - 710 909 IPR027417 -
Vra6g1243 2149 PANTHER DNA POLYMERASE I 485 2144 IPR002298 GO:0003887|GO:0006261
Vra6g1243 2149 MobiDBLite consensus disorder prediction 420 454 - -
Vra6g1243 2149 SMART ultradead3 481 708 IPR014001 -
Vra6g1243 2149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 697 916 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1243 K02349 - gmx:100813857 3515.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1243 6 22445781 22473677 Vra6g1243 6 22445781 22473677 ECH