Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1047 ATGGAAGCTGTTCCGGATCAAGACATTAGTATATGCACTCACTGTGATCGGGCTGTCCCTGTTGCAAATATTGACTTGCATTATGCTCATTGCTCTCGGAAACTTGAAAAATGCAAAATCTGTGGTGATATGGTTCCTAGAAAAAACGTGGAGGATCATTATTCAAACACACATGCACCGGTTCCTTGTTCATTATGCAGTGAGACAATGGAGCGTGATATTTTGGATATCCATAAAGGTGAAGAATGCCCTCAAAGGATTGTCACTTGTGAGTTCTGTGAGTTTCCATTGCCAGCAATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACATATGTAACAAATATGTTAGACTTCGTGAAAGATTCAGCCATGAGGCTCGGTGCAATGGCATTATCCAAGATACTTCTGTGGGCTCTTCAAGCAGGCATAAATCCAGTTTCGAGTCTTCATTCAACATGTTAAGCTGTAAGGAGTATTGGTCCTTGAAATGGAATGTGAGGGAAACCGAGGGAGATCCAGCTGCTGCTAGAAGAAGGCCGCAGAATGACTTCTCAACTAAACGCCTTCTTTTCACAATAGCCATCACTGGTATTGCTGTGATACTGGGATCTTTTTTTCTACAGAGGAAGGCAGAGCCCAGTGATGTGCATTAG 675 0.4296 MEAVPDQDISICTHCDRAVPVANIDLHYAHCSRKLEKCKICGDMVPRKNVEDHYSNTHAPVPCSLCSETMERDILDIHKGEECPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHICNKYVRLRERFSHEARCNGIIQDTSVGSSSRHKSSFESSFNMLSCKEYWSLKWNVRETEGDPAAARRRPQNDFSTKRLLFTIAITGIAVILGSFFLQRKAEPSDVH* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1047 224 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 6 155 - -
Vra6g1047 224 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 172 224 - -
Vra6g1047 224 SUPERFAMILY TRAF domain-like 12 59 - -
Vra6g1047 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 58 IPR013083 -
Vra6g1047 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 111 IPR013083 -
Vra6g1047 224 PANTHER XIAP-ASSOCIATED FACTOR 1-LIKE 172 224 - -
Vra6g1047 224 PANTHER XIAP-ASSOCIATED FACTOR 1-LIKE 6 155 - -
Vra6g1047 224 Pfam TRAF-type zinc finger 59 105 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1047 Vra-Chr6 15421010 15433206 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1047 - - vra:106765333 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1047 6 15421010 15433206 Vra6g1047 6 15421010 15433206 ECH