Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1034 ATGTCCCTATCCTACCCGCATTTCAATTATCAGGACCCACATAGTGCAAAAGAACACACCACCAACCTCACTCACCGCTCTCACTCTCACTCACCCACCCTCAACACATATATACCAACCTACATACAATCCCCGTTGCGAGACAGAAAACAAAGTGTCGTTTCGTATCGTGTCGCAATGGCCATGGCACTTCGCAGACTTTCCTCCACCATCAACAAACCGTTCTCCCACGCCACTTCCATTTATCGCACTTCGTCTTCGCTCTCTGCTCACGAAAAAGAGAAATCTCGCGCAGATTGGACGAAGCAGCTCAACGATCCTCTCGAGGTTGTGGATCCCGAGATCGCTGACATAATCGAACTCGAGAAAGCGCGCCAATGGAAGGGATTCGAACTTATTCCTTCCGAAAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACAAATAAATACAGCGAAGGATATCCAGGAGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTATGTCAGAAGCGTGCGCTTGAAGCTTTTCGGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAATCATTATCTGGATCCCCTTCTAACTTTCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCCCTGGATCTTCCCCATGGTGGACATCTATCGCATGGTTATCAGACCGACACCAAGAAGATATCAGCTGTATCAATATTCTTTGAAACCATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCCCGCCTTTATGATTATGCACGTGTTCGCAAGGTATGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCCTTTGATTATGCAGATATTGTAACAACCACAACACACAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTTTTCAGGAAGGGTGTGAAAGAAATAAACAAGCAAGGGAAGGAAGTGTTGTATGACTATGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTACAGGCTTAGCTGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAGAGCAAGTACTTAGCAACTGCGCAACATTTGCACAGAGTTTGTTAGAGAAAGGCTATGACCTTGTATCTGGTGGAACTGATAACCATTTAGTGTTAGTGAACTTGAGAAACAAGGGCATTGATGGTTCCAGGGTTGAGAAGGTACTAGAAGCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTATCTGCTATGGTTCCTGGTGGCATTCGGATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTTAAAAAAGTAGCTGAATACTTTGATGCAGCTGTCAAGTTAGCCTTACAGATTAAGGAAAATACCAATGGTACAAAGTTAAAGGATTTTGTGGCAGCCATGCAATCAGATGAACAAATTCAATCTAAGATTGCTAATCTCCGTCTTGAAGTAGAGGATTATGCTAAGCAGTTTCCGACAATTGGTTTTGAGAAAGAGACAATGAAGTATGGTAAGTGA 1713 0.4367 MSLSYPHFNYQDPHSAKEHTTNLTHRSHSHSPTLNTYIPTYIQSPLRDRKQSVVSYRVAMAMALRRLSSTINKPFSHATSIYRTSSSLSAHEKEKSRADWTKQLNDPLEVVDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQEQVLSNCATFAQSLLEKGYDLVSGGTDNHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEYFDAAVKLALQIKENTNGTKLKDFVAAMQSDEQIQSKIANLRLEVEDYAKQFPTIGFEKETMKYGK* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1034 570 Pfam Serine hydroxymethyltransferase 108 505 IPR039429 -
Vra6g1034 570 Gene3D Aspartate Aminotransferase, domain 1 112 557 IPR015422 GO:0003824
Vra6g1034 570 CDD SHMT 111 532 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vra6g1034 570 MobiDBLite consensus disorder prediction 1 31 - -
Vra6g1034 570 Gene3D - 137 410 IPR015421 GO:0003824
Vra6g1034 570 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 62 569 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vra6g1034 570 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 331 347 IPR019798 GO:0030170
Vra6g1034 570 Coils Coil 535 555 - -
Vra6g1034 570 SUPERFAMILY PLP-dependent transferases 96 561 IPR015424 -
Vra6g1034 570 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL 62 569 - -
Vra6g1034 570 Hamap Serine hydroxymethyltransferase [glyA]. 107 560 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1034 Vra-Chr6 14580012 14590138 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1034 K00600 - gmx:100816213 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1034 6 14580012 14590138 Vra6g1034 6 14580012 14590138 ECH