Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1033 ATGGCTTCTTTCTCTTCAATTGCAGTCACTGCAACTCTCAAGCTCCACGAACACTCCAGAAAATACTCACCAAGCTCTTATCCAACAGAGAAGGGTCAAAGCATTTCTTTCCAGAAAAGCCAAAGATTCGCTAATTTGGATTTTCGGGAAGCACTTTCATTGACCAGAGAGGGAACAGAAGAGGTGGAACAATCCTTCTACTTTCCCTTGTTGCAACAATGCAAAGATGAATGCTCCTACTCAGACACACAAATTGTTCATGGTCATGCCATGAAAACGGGTGCTCATGAAGACGTTTATGTCATGTCATTTTTGGTCGACGTTTATGTCAAATGTGGGAACATGGATGATGCTCGCAAGGTGTTTGACAACTTGCCTAGAAGAAACGTGGTTGCATGGACCACGTTAATAGTTGGTTATGCTCAGAACTCGCTGCCCAAGCATGGCATTCTTGCTTTTCAAGAGATGTTGTATGCTGGAAGTTCCCCTTCTGCTTACACTCTTGCTGTTGTTCTAAATGCTTGTGCTTCTTTGTACTCTCTTAAGTTAGGAGATCAATTCCATGCTTACATAATCAAATATCATGTTGAGTTTGACACCAATGTTGGCAATGCGCTTTGTAGTTTATACTCCAAATGTGGCAGGTTGGAGTATGCTCTGAAAGCATTCAGGAGAATAAGGCAAAAGAATGTAGTTTCATGGACTTCAGCTGTTTCTGCTTGTGGCGACAATGGTGCAGCTGTTAAAGGGTTAAAACTCTTTCTTGAGATGATTTCTGAGAACATAGAGCCGAATGAGTTCACTGTAACCAGTGTCTTGAGCCAGTGTTGTGCAATTCAGTCTCTAGAATTTGGGACACAGGTTCGTACGATGTGTATTAAATTTGGATATGAATCAAACCTACATGTTAGGAATTCTTTGCTGTATTTGTACATAAAAAATGGTTGCATTGGTGAGGCTCAGAGGTTGTTTAATGGAATGGATGATGTCAGTTTGGTTACATGGAATGCAATGATTGCCGGACATGCACAGATGATGGAACTCACAAAGGATAATCTTTCTTCATGCGAATATGGAAGTGAAGCACTGAAATTTTTCTCCAAGTTGAATCGGTCGGGCATTAAACCTGATCTGTATACCTTCTCCAGCGTCTTGACTATTTGTAGTAGAATTATGGCTTTAGAGCAAGGGGAGCAAATTCATGCGCAGATTATGAAAGCTGGGTTCTTGTCAGATGTGATTGTAGGTACTTCACTGGTTAACATGTACAATAAGTGTGGTAGCATTGAGAGGGCCAGCAAAGCATTTCTAGAGATGTCTACTAGAACTATGATATTATGGACTTCTATGATTACAGGTTTTTCACAGCATGGTATGTCACAACAAGCATTGCGTCTTTTTGGGGATATGAGGCTCACAAGAGTTAAACCAAATGCGGTTACTTTTGTGGGTGTTTTAGCAGCATGCAGCCATGCTGGAATGCTCAATCAAGCACTCAACTACTTTGAGATCATGCAAAAGAGATATAAAATTACACCTGTTATGGACCACTATGAGATCATGGTTGATATGTTTGTGAGGTTAGGTAGGCTGGAGCAAGCTCTGAATTGCATTAAGAAACTGAATTGTGCACCTAGTGAGTCTATTTGGTCAAGCTTCATTGCTGGTTGTAGAAGCCATGGGAATCTGGAATTGGGGTTTTATGCTGCTGAACAGTTACTAAGTCTCAAACCAAAAGATACAGAGACATATGTATTGTTGTTGAATATGTACCACTCAGCTGGGCGTTCTGAGGATGTTTCAAAGGTGAGGAAGATGATGAAAGAGAAGAATGTTGGAAAATTGAAGGATTGGAGCTGGATTAGTATTAAAAACAAAGTATATTTGTTTGAAACCACTGACAAAACACACCCAGAGAGTTCAGTAATATGTAAATCATTGGAAGATTTACTTGCCAAAGCCAAGAGTCTTGGCTACGAGATGCTAGAAAGTGTGGAAATACTTGATGAAGAGGAAGGGGAAAAGACATCCTCCCCTACCTTTTATCACAGTGAGAAGTTGGCCATTACATTTGGGTTGGAGAACTTGCCAAGTTCTTCTCCAGTAAGGGTTGTCAAGAGCACTTTATTATGCAGGGATAGCCATAATTTTATTAAGTATGTCTCAACACTGAGTGGTAGGGAAATCATCCTTAGAGACAGTAAGCGGCTTCACAAATTTGTCAATGGAAAATGCTCTTGTGGAAATTTTTGTGGTTTTCTCTAA 2265 0.404 MASFSSIAVTATLKLHEHSRKYSPSSYPTEKGQSISFQKSQRFANLDFREALSLTREGTEEVEQSFYFPLLQQCKDECSYSDTQIVHGHAMKTGAHEDVYVMSFLVDVYVKCGNMDDARKVFDNLPRRNVVAWTTLIVGYAQNSLPKHGILAFQEMLYAGSSPSAYTLAVVLNACASLYSLKLGDQFHAYIIKYHVEFDTNVGNALCSLYSKCGRLEYALKAFRRIRQKNVVSWTSAVSACGDNGAAVKGLKLFLEMISENIEPNEFTVTSVLSQCCAIQSLEFGTQVRTMCIKFGYESNLHVRNSLLYLYIKNGCIGEAQRLFNGMDDVSLVTWNAMIAGHAQMMELTKDNLSSCEYGSEALKFFSKLNRSGIKPDLYTFSSVLTICSRIMALEQGEQIHAQIMKAGFLSDVIVGTSLVNMYNKCGSIERASKAFLEMSTRTMILWTSMITGFSQHGMSQQALRLFGDMRLTRVKPNAVTFVGVLAACSHAGMLNQALNYFEIMQKRYKITPVMDHYEIMVDMFVRLGRLEQALNCIKKLNCAPSESIWSSFIAGCRSHGNLELGFYAAEQLLSLKPKDTETYVLLLNMYHSAGRSEDVSKVRKMMKEKNVGKLKDWSWISIKNKVYLFETTDKTHPESSVICKSLEDLLAKAKSLGYEMLESVEILDEEEGEKTSSPTFYHSEKLAITFGLENLPSSSPVRVVKSTLLCRDSHNFIKYVSTLSGREIILRDSKRLHKFVNGKCSCGNFCGFL* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1033 754 Gene3D Tetratricopeptide repeat domain 182 289 IPR011990 GO:0005515
Vra6g1033 754 Gene3D Tetratricopeptide repeat domain 290 391 IPR011990 GO:0005515
Vra6g1033 754 Gene3D Tetratricopeptide repeat domain 392 494 IPR011990 GO:0005515
Vra6g1033 754 Gene3D Tetratricopeptide repeat domain 44 181 IPR011990 GO:0005515
Vra6g1033 754 TIGRFAM PPR: pentatricopeptide repeat domain 232 266 IPR002885 -
Vra6g1033 754 TIGRFAM PPR: pentatricopeptide repeat domain 446 479 IPR002885 -
Vra6g1033 754 Pfam DYW family of nucleic acid deaminases 669 750 IPR032867 GO:0008270
Vra6g1033 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Vra6g1033 754 Pfam PPR repeat family 445 489 IPR002885 -
Vra6g1033 754 Pfam PPR repeat family 332 388 IPR002885 -
Vra6g1033 754 Pfam PPR repeat family 229 277 IPR002885 -
Vra6g1033 754 Gene3D Tetratricopeptide repeat domain 495 667 IPR011990 GO:0005515
Vra6g1033 754 Pfam E motif 560 621 IPR046848 -
Vra6g1033 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Vra6g1033 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Vra6g1033 754 PANTHER OS01G0913400 PROTEIN-RELATED 59 691 - -
Vra6g1033 754 Pfam PPR repeat 131 160 IPR002885 -
Vra6g1033 754 Pfam PPR repeat 104 130 IPR002885 -
Vra6g1033 754 Pfam PPR repeat 417 440 IPR002885 -
Vra6g1033 754 Pfam PPR repeat 305 327 IPR002885 -
Vra6g1033 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Vra6g1033 754 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 59 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1033 Vra-Chr6 14562245 14565301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1033 67 750 Glycoside Hydrolase AT3G49170 35.303 1.49e-143 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1033 - - gmx:100781103 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1033 6 14562245 14565301 Vra6g1033 6 14562245 14565301 ECH