Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1014 ATGGGAACCGCTTGGAGAAGAGCCTTTTGCACTAGCGACCCAGAGTCCACACTACATTCCAAACGCACCACCCGAAGCCCCTCTCCTTCTCCTGGAACCTGCGCTAGATTCAGCTTCCTCTCCTCGCCGTCACTGCACCACCACCCTCCCGCTTCTCCTCTCTCCCTCTTCAAAAACACCTTCAAATGCAGAAGTAATTGCGGAATCTGTTCGAATACCGTGAAGACGGGACAGGGAACTGCCATTTACACTGCAGAGTGCGGTCACGCGTTTCATTTCCCTTGCGTTGTTTCCCATGCACGCTCCCACGTCTGCCCCGTCTGTCGTGCCACGTGGAACGAAGTCCCGCTTCACCAAAACGACGCCGTCCTTCGTACCGTTCAAACCGCAAACCAGAAACCACTCGCTCCTCTTTTCTCCCAATCAGTAGCTTCCTACGACGACGACGAGCCTCTACCTACTTCTCTCACGTGCTCCACGCAAATCGTTCCAATTCCTGAGGCCGATGAAAGCTCGCACGAGGATGAGGATGAAAACGACGATGCATCAGACTTCCCTGGCTTTTCACTCCATCCATATCCTCAATCCTCGTTGCGACGCAACGCTGAGTCGAAAACTGTTCGAGTCAAGCTCATGCACGAGTGCGCCATTATATCAGTTTCCCCAAACTTTGAAACTCGTGCTTTGGTTTTACGAGTCAAGGCTCCGGCGCCGTCGCCGCCTCTTCGGAGACGGCAGGCGATGGATCTCGTGGCGGTGCTTGACGTTGGCAACGGTATGAACGGCGCGAAGTTTAACGTGTTAAAGCGCGTGATGCGACTGTTGGTATCGTCTCTCGGGGCTGCTGACCGGCTTGCTGTCGTGGCTTCGTCGGCTGATTCGAAGCGGTTGTTACCTCTGCGCAGAATGACGGCTCAGGGACAACGCACAGCTCGGCGCGTGGTGGACGGGGTCGTGTGTGGTCAAGGATCCGGTGTTGGTGAAGAAGCGATTAAAAAAGCGGGGAAGATTCTCGAAGATCGTAGAGAGAGAAATCCTGTAGCGAGGATTTTACTTCTATCCAACGGTGATCACAACAGCATGAGCAATAATCAACGGAGAAGCTTGAGCTACGCGTCCTCTATCGGGTTCGATTGTGTTGAAGTTCCGGTTCATTCGTCTGGGTTCGACAAAAAAACGACCGGTTTAACAACCGAACCGTTTGAGGATGATTTTATCCCATACATTAACAGAATATTAAGCGTGGCGGTGCAGGATTTAAGAATTCGGCTTGGCTTCTCTGCGCCGGCTGAAATTCGAGCCGTTTATTCATGCAGCGGGGGACCCACCGCGCTAAACGCAAACTCGGCTAGGCTTGGTGATTTATACGGCGAAGAAGAGAAGGAGTTGTTGGTGGAGGTCAGAGTGCCAACGTTAGCATTGGGGAACCACCACGTGTTGACAGTGCAGTGTTTCAACAAAGACCCAGCGTCTCAAAAATTCGTATACAGTGCAGAACACCCATTTACGGTGGTGCCGCCCAAGAGTTCTTTTCCCTGCGGCGGCAGGGTTGAGCGGTTGAGGAATGTGTTTATAACCAGCCGAGCCGTAGCCGAGTCAAGGAGGATGGCGAAACACAAAGAGTTTTTGAGCGCTCATCATTTGCTTGCTTCGGCTCGTGCGCTTCTAGTGCAGTTCAGCTCTGCCGAGGAGTACGTGCGCAGCTTGGACGCGGAGCTTGCAGAGCTTCAGTGGAGAAGACAGCACCGGGAGACGGTGGGGACGGGGCGGAGTGGAGAGAGGGAGAGGGACCTAAGATTGGTGGATGACGGGGGCGAAATGTTGACGCCGACATCGGCTTGGAGAGCTGCTGAGAAGCTGGCTAAAATGGCTAGAATGAAGAAATCGTTGAATAAAGTTGGCGACTTGCACGGCTTCGAAAATGCTAGGTTTTAA 1935 0.5323 MGTAWRRAFCTSDPESTLHSKRTTRSPSPSPGTCARFSFLSSPSLHHHPPASPLSLFKNTFKCRSNCGICSNTVKTGQGTAIYTAECGHAFHFPCVVSHARSHVCPVCRATWNEVPLHQNDAVLRTVQTANQKPLAPLFSQSVASYDDDEPLPTSLTCSTQIVPIPEADESSHEDEDENDDASDFPGFSLHPYPQSSLRRNAESKTVRVKLMHECAIISVSPNFETRALVLRVKAPAPSPPLRRRQAMDLVAVLDVGNGMNGAKFNVLKRVMRLLVSSLGAADRLAVVASSADSKRLLPLRRMTAQGQRTARRVVDGVVCGQGSGVGEEAIKKAGKILEDRRERNPVARILLLSNGDHNSMSNNQRRSLSYASSIGFDCVEVPVHSSGFDKKTTGLTTEPFEDDFIPYINRILSVAVQDLRIRLGFSAPAEIRAVYSCSGGPTALNANSARLGDLYGEEEKELLVEVRVPTLALGNHHVLTVQCFNKDPASQKFVYSAEHPFTVVPPKSSFPCGGRVERLRNVFITSRAVAESRRMAKHKEFLSAHHLLASARALLVQFSSAEEYVRSLDAELAELQWRRQHRETVGTGRSGERERDLRLVDDGGEMLTPTSAWRAAEKLAKMARMKKSLNKVGDLHGFENARF* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1014 644 MobiDBLite consensus disorder prediction 168 201 - -
Vra6g1014 644 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Vra6g1014 644 SUPERFAMILY RING/U-box 64 122 - -
Vra6g1014 644 Pfam von Willebrand factor type A domain 249 363 IPR002035 -
Vra6g1014 644 CDD RING-H2 67 109 - -
Vra6g1014 644 SMART VWA_4 247 414 IPR002035 -
Vra6g1014 644 Pfam RING-like zinc finger 66 96 IPR001841 -
Vra6g1014 644 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 49 644 - -
Vra6g1014 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 138 IPR013083 -
Vra6g1014 644 SMART ring_2 67 108 IPR001841 -
Vra6g1014 644 SUPERFAMILY vWA-like 235 361 IPR036465 -
Vra6g1014 644 ProSiteProfiles VWFA domain profile. 249 377 IPR002035 -
Vra6g1014 644 Gene3D von Willebrand factor, type A domain 248 399 IPR036465 -
Vra6g1014 644 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 49 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1014 Vra-Chr6 13851286 13853483 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1014 - - gmx:100795015 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1014 6 13851286 13853483 Vra6g1014 6 13851286 13853483 ECH