Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1007 ATGGCCGTGGGAGGATTCTCCGTTGATGCTTCTTCAACCATGGCCTTCGACGGCAAGATCACAGTCTCCGTTCTCATCACTTGCATCGTTGCTGCATCCAGTGGCCTAATTTTCGGATACGACATCGGAATCACAGGAGGTGTTACCACCATGAAACCATTTCTTGAAGAATTCTTTCCATCGATATTAAGAAAGTCTGCCAGAGCTGAAAGAAACGAGTATTGTGTGTATGATAATCAGCTGTTTACACTATTTACGTCCTCCCTTCATCTGGCGGGATTAATATCCTCTCTCTTGGCCAGTCGTGTCACCACCGCGTTGGGTCGGAGAAACACCATGGTCTTTGGTGGTTGCATCTTTTTTGCCGGTGGTGCCATCAATGGTGCTGCTCAAAATATTTTCATGCTCATCTTAGGTCGAATCTTACTTGGCTTTGGGGTCGGTTTCACTAATCAAGCAACGCCAGTGTACTTGTCGGAAATCGCTCCACCCAGATGGCGAGGCGCGTTCAACACAGCCTTCCAGTTCTTCATCGGACTCGGCGTGGTGGCGGCGAACTTCATAAACTACGGAACGGCGAGGTTTCCATGGGGGTGGCGCGTGTCACTGGGCCTCGCCACGGTCCCCGCAATCATCATGACAATTGGTGCCTTGCTAATCCCGGACACTCCCAGCAGCCTAATAGAACGCGACCACATAGATGAAGCCCGAAATGCCCTTCGCAAAGTTCGGGGCTCCGCCGTTGACGTGGAACCCGAACTCCAAGAACTCATCAAATCGTCGCAGGTTTCCAAAGCCATTGAAAAGGAAAGTGTTAGGACCATTTTTGAGGAACAATATCGGCCTCAGTTGGTTATGGCGTTCGCTATTCCACTGTCTCAGCAGCTTACGGGGATCAACATTGTGGCCTTCTATGCTCCTAACCTCTTTCAGTCTGTGGGCTTAGGAAATGACTCTGCGTTGCTTTCCGCCGTTATACTCGGACTCGTCAACCTCTCTTCCATCCTCGTCTCAACTGCGGTTGTCGATCGCTTTGGCAGAAGATTCTTGTTCATAGCTGGTGGCCTTCAAATGCTTCTGTGCATGCTTGCGGTGGCTATTGTGCTGGCAGTGGCGAGTGGTGTTCATGGTACAGAGAACATTTCAAAGGACAACACCATATTGGTACTAGTGTTGTTTTGCTTCTACGCTGCAGGTTTTGGTTGGTCCTGGGGCCCTCTTTGCTGGCTAATTCCAAGCGAGATTTTTCCCTTAAAGATAAGATCTACTGGACAAAGTATAGCTGTTGCAGTGCAATTCTTCACCGTGTTTGTTCTATCTCAGACTTTCTTGACAATGCTTTGCCACTTTAAGTTTGGGGCTTTCCTCTTCTATGCGAGTTGGATTGCAGTCATCACCATCTTTGTCATACTGTTCTTGCCCGAGACCAAAGGAATTCCTTTGGATTCAATGTATGCAATTTGGAGCAAACACTGGTATTGGCGAAGGTTTGTTGTCAAAGGACAAGTTAGCCAATATAATCTTCCAATGAATAATTAG 1539 0.4808 MAVGGFSVDASSTMAFDGKITVSVLITCIVAASSGLIFGYDIGITGGVTTMKPFLEEFFPSILRKSARAERNEYCVYDNQLFTLFTSSLHLAGLISSLLASRVTTALGRRNTMVFGGCIFFAGGAINGAAQNIFMLILGRILLGFGVGFTNQATPVYLSEIAPPRWRGAFNTAFQFFIGLGVVAANFINYGTARFPWGWRVSLGLATVPAIIMTIGALLIPDTPSSLIERDHIDEARNALRKVRGSAVDVEPELQELIKSSQVSKAIEKESVRTIFEEQYRPQLVMAFAIPLSQQLTGINIVAFYAPNLFQSVGLGNDSALLSAVILGLVNLSSILVSTAVVDRFGRRFLFIAGGLQMLLCMLAVAIVLAVASGVHGTENISKDNTILVLVLFCFYAAGFGWSWGPLCWLIPSEIFPLKIRSTGQSIAVAVQFFTVFVLSQTFLTMLCHFKFGAFLFYASWIAVITIFVILFLPETKGIPLDSMYAIWSKHWYWRRFVVKGQVSQYNLPMNN* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1007 512 ProSitePatterns Sugar transport proteins signature 2. 142 167 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra6g1007 512 CDD MFS_STP 30 475 IPR044778 GO:0015145|GO:0015749
Vra6g1007 512 Gene3D MFS general substrate transporter like domains 17 491 IPR036259 -
Vra6g1007 512 PRINTS Sugar transporter signature 35 45 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra6g1007 512 PRINTS Sugar transporter signature 137 156 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra6g1007 512 PRINTS Sugar transporter signature 294 304 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra6g1007 512 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra6g1007 512 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra6g1007 512 TIGRFAM SP: MFS transporter, sugar porter (SP) family 12 482 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra6g1007 512 Pfam Sugar (and other) transporter 28 488 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra6g1007 512 PANTHER SUGAR TRANSPORTER 3 502 - -
Vra6g1007 512 ProSiteProfiles Major facilitator superfamily (MFS) profile. 27 477 IPR020846 GO:0022857
Vra6g1007 512 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 3 502 IPR045262 GO:0015144
Vra6g1007 512 SUPERFAMILY MFS general substrate transporter 29 482 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1007 Vra-Chr6 13233764 13257636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1007 51 497 Organic Solute Cotransporters AT1G34580 64.159 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1007 K24193 - gmx:100783916 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1007 6 13233764 13257636 Vra6g1007 6 13233764 13257636 ECH