Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0787 ATGGAACAACTTAAGCCAAGCGCTGCCAACTCTTCTCCTCTCACACCGCTAGGTTTCTTGGACAGAGCCGCCACCGTTTACGGCGACGCCCCTTCCATTGTCTACAACCACACAACCTTCACCTGGGCCCAAACCCACCGCCGATGCCTCCAGCTCGCCTCCGCCATCTACTCCCTCGGAATCCGCCGTGGCAGCATCGTCTCCGTCGTCGCTCCCAACATCCCCGCCATGTACGAGCTCCAGTTTTCCATCCCCTTCGCCGGTGCTGTCCTCAACAACATCAACCTCCGCCTCGACGCCCGCACCATCTCCGTCATCCTCCGCCATGCGAACTCCGCGCTCGTCTTCGTCGACTGCGCCTCACGCGACCTCATCCTCGAAGCCTTGTCCCTCTTCCCTAAACACCACACTCAACGCCCACTACTGGTTCTCATCGCCGACGACAGTGTCGAAAACGCAGACATCTCATGCTCCGGTGATTTCGTTGACACATACGAGGGCCTGGTGAGCAAGGGAGATCCGAACTTCGAATGGGTACGGCCCATATCGGAGTGGGACCCGATGATTCTTAACTACACCTCAGGAACGACGTCGTCTCCGAAAGGGGTTGTTCACTCCCACAGAGGAATATTCATAGTCTCCGTCGACACGCTTATCGACTGGACTGTTCCCAAGAGACCAATTTATCTCTGGACGCTCCCGATATTCCACGCTAACGGGTGGAGCCTCCCGTGGGGTATCGCTGCCTCGGGCGGCACCAACGTCTGCGTCCGCAAGTTCGATGCGGGGATTATTTACTCTCTCATAAAACGCAACCACGTGACACACATGTGCGGCGCGCCGGTGGTGCTCAGCATGTTGACAAACTCCCCGGACAACAAACCGTTGGAGAGGCCAGTTCATATACTCACGGCGGGAGCACCGCCGCCAGCGGCGGTGCTCCATCGGACGGAGGCGCTCGGGTTTGTGGTGAGCCACGGGTACGGCTTGACGGAAACTGCGGGATTGGTGGTGTCATGCGCGTGGAAGGAGAAATGGAACCGGCTTCCGGCGGCGGATCGGGCGCGGCTAAAGGCGCGGCAGGGGGTGAGGACAGTGGGGATGGCGGAGGTTGACGTGGTGGGTCCCACCGGAGAGAGCGTGAAGCGCGACGGGGTGAGCGTCGGGGAGATTGTGATGAGAGGAGGGTGCGTGATGTTGGGATACCTTAAAGACCCCGAAGGAACCGCGAGTTGTTTTAAAAACGGGTGGTTCTACACAGGGGATGTCGGGGTGATGCACGAGGACGGGTACATGGAAATTAAGGACAGGTCAAAAGATGTTATCATCAGCGGCGGCGAGAACCTGAGCAGCGTGGAGGTGGAGTCGATTTTGTATGGGCATCCGGCGGTGGTGGAGGCGGCGGTGGTGGCGCGACCGCATGAGTATTGGGGAGAGACGCCGTGCGCGTTTGTGAGCTTGAAGGCGGGGTTGAAAGAGAAACCCAGTGAAGATGACATAATAAAGTACTGCAGGGAGAAGATGCCGCATTATATGGTTCCGAAGACGGTGGTCTTCAAGGATGAACTTCCGAAGACATCGACGGGGAAGATCCAGAAGTTTCTCCTGAGACAGATCGCGAAGGAGATGGGTTCTTCAATGCAAAGTCGAATGTGA 1656 0.5785 MEQLKPSAANSSPLTPLGFLDRAATVYGDAPSIVYNHTTFTWAQTHRRCLQLASAIYSLGIRRGSIVSVVAPNIPAMYELQFSIPFAGAVLNNINLRLDARTISVILRHANSALVFVDCASRDLILEALSLFPKHHTQRPLLVLIADDSVENADISCSGDFVDTYEGLVSKGDPNFEWVRPISEWDPMILNYTSGTTSSPKGVVHSHRGIFIVSVDTLIDWTVPKRPIYLWTLPIFHANGWSLPWGIAASGGTNVCVRKFDAGIIYSLIKRNHVTHMCGAPVVLSMLTNSPDNKPLERPVHILTAGAPPPAAVLHRTEALGFVVSHGYGLTETAGLVVSCAWKEKWNRLPAADRARLKARQGVRTVGMAEVDVVGPTGESVKRDGVSVGEIVMRGGCVMLGYLKDPEGTASCFKNGWFYTGDVGVMHEDGYMEIKDRSKDVIISGGENLSSVEVESILYGHPAVVEAAVVARPHEYWGETPCAFVSLKAGLKEKPSEDDIIKYCREKMPHYMVPKTVVFKDELPKTSTGKIQKFLLRQIAKEMGSSMQSRM* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0787 551 CDD ttLC_FACS_AEE21_like 12 537 - -
Vra6g0787 551 SUPERFAMILY Acetyl-CoA synthetase-like 11 542 - -
Vra6g0787 551 PANTHER ACYL-ACTIVATING ENZYME 2 550 - -
Vra6g0787 551 Gene3D - 2 439 IPR042099 -
Vra6g0787 551 PANTHER LONG-CHAIN ACYL-COA SYNTHETASE 2 550 - -
Vra6g0787 551 Pfam AMP-binding enzyme 21 444 IPR000873 -
Vra6g0787 551 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Vra6g0787 551 Pfam AMP-binding enzyme C-terminal domain 453 530 IPR025110 -
Vra6g0787 551 Gene3D - 440 550 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0787 Vra-Chr6 7700588 7702862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0787 1 543 EF-hand Containing Proteins AT1G21540 62.432 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0787 - - gmx:100779857 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0787 6 7700588 7702862 Vra6g0787 6 7700588 7702862 ECH