Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0578 ATGGCGGCCGCGAATGCTCCGATCACCATGAAAGAAGCCCTAACTTTGCCGAGCATTGGCATCAACACGCAATTCATCACGTTCACACACGTGACGATGGAATCGGATAAGTATATATGTGTTCGAGAAACCTCTCCTCAGAATAGCGTGGTCATCATTGATATGGCCATGCCAAATCAGCCTTTGAGGAGGCCTATCACTGCAGATTCCGCTCTTATGAATCCTAATTCTAGAATCCTTGCTTTGAAAGCGCAACTGCAAGGGACTACTCAAGATCATCTACAAATATTTAATATTGAGCTGAAAGCAAAGATGAAATCATATCAGATGCCTGAGCAGGTTGTCTTTTGGAAGTGGATTAGCCCCAAGATGTTGGGTCTTGTAACGCAGACCTCTGTATACCACTGGTCAATTGAAGGTGATTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTCTTGATTGGCATTGCTCCTGGTTCCCCTGAGAGGCCTCAATTGGTTAAGGGAAACATGCAACTTTTCTCTGTGGATCAACAACGCAGTCAGGCTCTTGAAGCTCATGCTGCATCATTTGCCCAATTTAAAGTTCCTGGAAATGAAAACCCTTCTGTTTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGTCAGGTTACATCCAAGTTGCATGTTATAGAACTGGGTGCTCAGCCAGGGAGGCCGTCATTTACGAAGAAACAAGCAGATCTTTTCTTCCCCCCTGATTTTGCTGATGATTTTCCAGTTGCCATGCAGATATCTCACAAATACAATTTGATTTATGTGATTACGAAACTTGGGCTACTATTTGTCTATGATTTGGAGACAGCTACAGCTGTATACAGGAACAGAATCAGTCCTGATCCTATATTTTTGACCTCAGAGGCTACTTCTGTGGGAGGCTTTTATGCCATCAACAGGAGAGGCCAGGTCTTATTGGCTACTGTTAATGAACAAACCATTGTCAATTTTGTCAGTGGTCAATTAAACAATTTGGAGCTAGCAGTTAGTCTTGCCAAAAGAGGAAATCTACCTGGTGCTGAGAAACTGGTAGTGGAACGTTTTCATGAACTGTTTGCCCAAACAAAATATAAAGAAGCTGCAGAGCTTGCAGCTGAATCTCCACAAGGAATCCTTCGAACTCCTGACACAGTTGCAAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTATTGCAGTATTTTGGAACACTTTTGACCAGGGGAAAGCTGAATTCCTTTGAATCATTAGAATTGTCAAGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAGAACTGGTTGGCAGAGGACAAGCTTGAATGCAGCGAGGAACTAGGAGATCTTGTTAAGACTGTGGATAATGACCTTGCTCTAAAAATATATATCAAAGCCAGAGCTACACCAAAAGTTGTTGCTGCGTTTGCTGAGAGAAGGGAGTTTGACAAAATTCTGATATACTCTAAACAGGTTGGATACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCAGGACAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACTATAACTGATCTCTTTCTTCAGAGAAATCTGATCCGAGAGGCAACCGCTTTTCTCCTTGATGTTTTAAAACCAAACCTACCAGAGCATGGGTTCCTTCAGACAAAGGTCTTGGAGATAAATCTGGTGACTTTCCCTAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGCCTTTACGTGCGAGCTTTGCAACATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTTAATACACATGCAATTGAACCTCAGTCACTTGTAGAGTTTTTTGGTACACTGTCACGAGAATGGGCATTAGAGTGCATGAAGGACCTACTGCTGGCAAATCTTAGGGGGAACCTTCAGATCATTGTGCAGGTTGCTAAAGAATATTGTGAACAATTGGGGGTTGAGGCCTGCATAAAAATTTTTGAGCAGTTTAGGTCGTATGAGGGATTGTATTTTTTCCTTGGATCTTACTTGAGCTCCAGCGAGGATCCTGACATTCACTTTAAGTACATTGAGGCAGCAGCAAAGACCGGTCAAATCAAGGAGGTTGAGCGCGTGACAAGAGAATCAAATTTCTATGATGCTGAGAAAACCAAAAACTTTCTTATGGAGGCTAAGCTTCCAGATGCACGACCTTTGATAAATGTTTGCGATCGTTTTGGATTTGTTCCAGATCTAACTCACTATCTGTACACAAACAACATGCTTCGCTACATTGAAGGCTATGTTCAGAAGGTAAACCCAGGGAATGCTCCTTTAGTTGTGGGGCAGCTGCTGGATGATGAATGCCCAGAAGATTTTATCAAGGGCTTGATTCTCTCTGTTCGTTCGTTACTGCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGGCTTCGTTTGCTCACACAATTCTTGGAACATCTTGTAAGCGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATTATCATTGATAGCAACAACAACCCAGAACATTTCCTCACGACCAACCCATACTACGATTCTAGAGTTGTGGGCAAGTACTGTGAGAAACGTGATCCCACCTTAGCTGTCGTAGCTTATCGGCGAGGACAATGTGATGATGAACTTATCCATGTCACTAATAAAAATTCTTTGTTCAAACTGCAAGCAAGATATGTTGTTGAGAGAATGGATGGTGATCTGTGGGCCAAAGTTCTTGATCCTGATAATGACTATAGAAGGCAACTTATTGATCAAGTTGTATCCACTGCTTTGCCAGAAAGCTCAAGCCCTGAGCAAGTTTCTGCAGCTGTTAAGGCTTTCATGACAGCTGATCTGCCTCATGAACTGATTGAACTTCTTGAGAAGATCGTCCTTCAGAATTCTGCATTCAGTGGGAACTTTAATTTGCAGAATCTTCTTATTTTGACGGCGATAAAGGCCGATCCGTCCAGAGTTATGGATTATGTCAATAGGTTGGATAATTTTGATGGACCTGCAGTTGGAGAAATGGCAGTAGAAGCTCAGTTATATGAGGAAGCATTTGCCATTTTTAAGAAGTTCAACTTGAATGTTCAAGCAGTCAATGTGTTGCTTGATAATATTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTTAGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTCAGGGATGGGCTTGTAAGTGATGCAATTGAATCATTTATACGAGCAGATGATTCTACACAATTTTTAGATGTTATCCGTGCTGCTGAAGATGCCAATGTTTACCATGACTTGGTGAAATACTTGCTGATGGTAAGGCAGAAAGCAAAAGAACCCAAGGTTGACAGTGAGCTCATTTATGCATATGCAAAGATTGATAGGCTAAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTTGCCAATCTTCAAACTGTTGGTGACCGGTTGTATGATGAAGCATTATATGAGGCTGCAAAAATCATATTTGCTTTTATATCTAACTGGGCCAAGTTGGCCATCACACTGGTCAAGTTAAAGCAGTTTCAAGGTGCTGTTGATGCAGCAAGGAAAGCTAACAGCTCAAAGACATGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCAGAGGAGTTTCGATTGGCCCAGATTTGTGGACTCAACATAATTATTCAGGTGGATGACTTGGAAGAAGTCAGTGAGTATTACCAAAATAGAGGTTGTTTCAATGAGCTAATATCTCTCATGGAGAGTGGTTTAGGGCTAGAAAGGGCTCATATGGGCATCTTTACTGAGCTTGGAGTTCTATATGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCAACCAGGCTCAATATTCCCAAACTCATACGAGCTTGCGATGAACAACAGCACTGGAAAGAATTGACCTATTTGTATATACAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTTAAAGTTGCTAATGTGGAACTGTATTATAAGGCTGTCCACTTCTACTTGGAAGAGCATCCAGATCTTATAAATGATGTTCTGAATGTCCTTGCACTTCGTGTGGATCATGCTCGTGTTGTTGACATCTTGCGGAAGGCTGGTCACCTTCGCCTTGTGAAACCATATATGGTTGCGGTTCAAAGCAACAATGTATCTGCTGTTAATGAAGCATTGAATGAGATATATGTTGAGGAGGAGGATTATGATAGATTGCGCGAGTCAATTGATTTGTATGATAACTTTGATCAAATAGGCCTTGCCCAAAGGATTGAAAAGCATGAGCTTCTTGAGATGAGACGAGTTGCTGCATATATTTACAAGAAGGCAGGTAGGTGGAAGCAGTCTATTGCTTTGTCAAAGAAGGATAACCTATACAAAGACGCCATGGAGACAGCCTCACAATCTGGAGAACGTGAACTTGCTGAGGAGTTGCTTGTTTATTTCATCGATCAGGGAAAGAAGGAATGTTTTGCCTCATGTCTATTTGTTTGCTATGATTTGATTCGGGCAGACATTGTTCTTGAACTAGCTTGGATGCACAATATGGTGGACTTTGCCTTCCCATATCTATTGCAGTTTATTCGTGAGTACACTGGCAAAGTCGATGAGCTAGTGAAGGACAAAATTGAAGCACAAAACGAATTGAAGGCTAAGGAGCATGAAGAAAAGGAAGTAGTTGCGCAGCAGAACATGTATGCTCAATTATTGCCCCTTGCTTTGCCTGCACCACCAATGCCTGGAATGGGAGGCCCAGTAGGAATGGGAGGAGGCTTTGCTCCTCCCCCTCCAATGGGTGGACTTGGGATGCCCCCAATGCCTCCATACGGCATGCCACCCATGGGCAGTAGCTACTGA 5124 0.4231 MAAANAPITMKEALTLPSIGINTQFITFTHVTMESDKYICVRETSPQNSVVIIDMAMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIELKAKMKSYQMPEQVVFWKWISPKMLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFASKTLNAGQVTSKLHVIELGAQPGRPSFTKKQADLFFPPDFADDFPVAMQISHKYNLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVSLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNSFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLANLRGNLQIIVQVAKEYCEQLGVEACIKIFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELIHVTNKNSLFKLQARYVVERMDGDLWAKVLDPDNDYRRQLIDQVVSTALPESSSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLRDGLVSDAIESFIRADDSTQFLDVIRAAEDANVYHDLVKYLLMVRQKAKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQTVGDRLYDEALYEAAKIIFAFISNWAKLAITLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLEEHPDLINDVLNVLALRVDHARVVDILRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLYDNFDQIGLAQRIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADIVLELAWMHNMVDFAFPYLLQFIREYTGKVDELVKDKIEAQNELKAKEHEEKEVVAQQNMYAQLLPLALPAPPMPGMGGPVGMGGGFAPPPPMGGLGMPPMPPYGMPPMGSSY* 1708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0578 1707 SUPERFAMILY ARM repeat 1052 1195 IPR016024 -
Vra6g0578 1707 Coils Coil 1477 1497 - -
Vra6g0578 1707 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 551 697 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 PANTHER CLATHRIN HEAVY CHAIN 1 1706 - -
Vra6g0578 1707 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 1706 - -
Vra6g0578 1707 SUPERFAMILY ARM repeat 901 1067 IPR016024 -
Vra6g0578 1707 Pfam Clathrin, heavy-chain linker 344 367 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Vra6g0578 1707 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1437 1580 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 SUPERFAMILY ARM repeat 457 793 IPR016024 -
Vra6g0578 1707 Pfam Region in Clathrin and VPS 1440 1579 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 Pfam Region in Clathrin and VPS 993 1130 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 Pfam Region in Clathrin and VPS 1292 1431 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 Pfam Region in Clathrin and VPS 555 690 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 Pfam Region in Clathrin and VPS 701 840 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 Pfam Region in Clathrin and VPS 1146 1281 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 Pfam Region in Clathrin and VPS 850 983 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 Gene3D Tetratricopeptide repeat domain 1197 1536 IPR011990 GO:0005515
Vra6g0578 1707 Gene3D Tetratricopeptide repeat domain 1057 1196 IPR011990 GO:0005515
Vra6g0578 1707 Gene3D Tetratricopeptide repeat domain 902 1056 IPR011990 GO:0005515
Vra6g0578 1707 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1288 1434 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 700 842 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 847 986 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1142 1283 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 SUPERFAMILY ARM repeat 1196 1531 IPR016024 -
Vra6g0578 1707 Gene3D - 1 377 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Vra6g0578 1707 PIRSF CHC 3 1685 IPR016341 GO:0016192|GO:0032051|GO:0071439
Vra6g0578 1707 Pfam Clathrin propeller repeat 154 197 IPR022365 -
Vra6g0578 1707 Pfam Clathrin propeller repeat 20 55 IPR022365 -
Vra6g0578 1707 Coils Coil 1617 1651 - -
Vra6g0578 1707 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 993 1138 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 SMART CLH_2 1437 1596 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 SMART CLH_2 847 986 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 SMART CLH_2 551 693 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 SMART CLH_2 993 1138 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 SMART CLH_2 1288 1434 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 SMART CLH_2 1142 1283 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 SMART CLH_2 700 842 IPR000547 GO:0006886|GO:0016192
Vra6g0578 1707 Pfam Clathrin-H-link 369 434 - -
Vra6g0578 1707 SUPERFAMILY Clathrin heavy-chain terminal domain 5 343 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Vra6g0578 1707 SUPERFAMILY ARM repeat 345 500 IPR016024 -
Vra6g0578 1707 Gene3D - 1542 1638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0578 Vra-Chr6 5122014 5135842 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0578 K04646 - gmx:100786617 3192.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0578 6 5122014 5135842 Vra6g0578 6 5122014 5135842 ECH
Vra3g1197 3 12737134 12749238 Vra6g0578 6 5122014 5135842 PCT