Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0489 ATGGAGAAGTTTCCCGTGATCAACTTGGCGAATATCAACGGTGAGGAGAAGAAGGCCACCCTAGAGCAGATCGAAGATGCTTGCCAAAACTGGGGATTTTTTGAGTTGGTGAATCACGGAATACCCCACGAACTTCTTGATAGGGTGGAAAGGTTAACAAAAGAGCATTATAGGAAATGCATGGAGAAGAGGTTCAACGAGGCTGTGGGAAGCAAGGGGTTAGAGTGTGTCCAAGACGAATTGAAGGACATGGACTGGGAGAGCACCTTCTTCTTGCGCCATCTTCCAACGTCCAACATCTCTGAAATCCCTGATCTCACACAAGAGTACAGGGATGCAATGAAGGAATTTGCAGAGAAATTGGAGAAACTGGCAGAGGAATTGCTAGATATGCTGTGTGAAAATCTTGGATTGGAGAAGGGGTACTTGAAGAGGGCGTTTCATGGATCAAGAGGTCCTAATTTTGGGACAAAGGTGGCAAACTACCCTGCATGTCCAAAGCCAGAATTGGTGAAGGGTCTTCGTGCCCATACAGATGCGGGTGGGATAATCCTTCTCTTGCAAGACGACAAGGTGAGTGGCCTTCAGCTTCTCAAAGATGGGNAATGGGTGGATGTGCCTCCNATGCGNCATTCCATTGTTGTTAACCTNGGCGACCAGATTGAGGTAATAAGCAATGGGAAATACAAGAGTGTGGAGCATCGTGTGATTGCTCGAAGTGATGGAACGAGAATGTCGGTGGCCTCATTCTACAACCCTGGCAGTGATGCTGTTATCTACCCAGCACCACCATTGTTGGAGAGAGAGGCAAAGGAGGCAGAAGTTGTGTACCCTAAATTTGTGTTTGAGGATTACATGAAGCTCTATGCTACGCTCAAGTTCCAACCAAAGGAGCCAAGATTTCAAGCCTTCAACGCTGTCAACTCTTCTTAG 933 0.4695 MEKFPVINLANINGEEKKATLEQIEDACQNWGFFELVNHGIPHELLDRVERLTKEHYRKCMEKRFNEAVGSKGLECVQDELKDMDWESTFFLRHLPTSNISEIPDLTQEYRDAMKEFAEKLEKLAEELLDMLCENLGLEKGYLKRAFHGSRGPNFGTKVANYPACPKPELVKGLRAHTDAGGIILLLQDDKVSGLQLLKDGXWVDVPPMRHSIVVNLGDQIEVISNGKYKSVEHRVIARSDGTRMSVASFYNPGSDAVIYPAPPLLEREAKEAEVVYPKFVFEDYMKLYATLKFQPKEPRFQAFNAVNSS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0489 310 SUPERFAMILY Clavaminate synthase-like 3 302 - -
Vra6g0489 310 Pfam non-haem dioxygenase in morphine synthesis N-terminal 5 92 IPR026992 -
Vra6g0489 310 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 304 - -
Vra6g0489 310 Coils Coil 107 134 - -
Vra6g0489 310 PANTHER ACC OXIDASE 2 3 304 - -
Vra6g0489 310 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 153 253 IPR005123 -
Vra6g0489 310 Pfam 2OG-Fe(II) oxygenase superfamily 159 253 IPR044861 -
Vra6g0489 310 Gene3D - 1 310 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0489 Vra-Chr6 4083246 4084545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0489 3 252 Glycosyltransferase AT5G59530 32.443 1.86e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0489 K05933 - gmx:100815336 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0489 6 4083246 4084545 Vra2g1518 2 23167392 23168332 PCT