Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0260 ATGGAACAACCAAAACACAAATTTCTTCTGATTCTAACGCTTCTTTTCTCAACCGTCACGGTTGAATCTGAATACCTTCGCCCTCTTCCTCGTAAAACCTTAACCATCCCACGGTATTCAGTTTCCAAGGCTCACTCCTCTTATCCTCAACAGGTACACATTTCTTTGGCGGGAGAGAAACACATTAGAATTACCTGGATAACCGATGATAAACATTCACCCTCGTATGTAGAATACGGAACATTACCTGGGAGATATGACTCAATTGCTGAAGGAGAGGTCACCTCTTATAACTATATGTTATATACCTCAGGAACGATACACCATGTTGTAATTGGACCTTTGGAAGACAATACTGTGTACTTTTACCGTTGTGGGGGAAAAGGTCCTGATTTCCAGCTCAAAACCCCTCCAAACCAATTTCCAGTTGTTTTTGCTGTGGCTGGTGATCTTGGTCAGACTGGCTGGACTAAATCAACATTGGCTCACATTGACCAATCTCAATATGATGTCTACCTGCTTCCAGGAGACCTTTCATATGCTGATTGTATGCAGCATCTGTGGGACAGTTTTGGTGAACTAGTGGAGCCGCTTGCTAGTACAAGGCCATGGATGGTGACAGAGGGTAACCATGAAGAAGAGAACATACTCTTGTTAACGGACAAGTTTGTGTCCTATAATTCCAGATGGAAAATGCCATTTGAGGAAAGTGGATCAACTTCAAATCTCTATTATTCTTTTGAGGTTGCTGGTGTCCACGTTATCATGCTTGGCTCCTATGAAGATTATGATGTGTACTCTGAACAATATAGATGGCTAAAGGAAGATCTGTCAAAGGTTGATAGGGAAAGGACACCTTGGTTGCTTGTGTCATTTCATATACCTTGGTATAATAGTAACAAGGCCCATCAAGGTGCAGGGGATGATATGATGGCAGCTATTGAGCCGTTGCTTTATGCCGCTAGTGTTGATTTAGTTATTGCTGGTCATGTTCACGCTTACGAACGTTCGAAACGTGTGTATAATGGAAGATTGGATCCCTGTGGTGCCGTCCATATAACTATAGGTGATGGAGGAAACAGGGAAGGCTTAGCTCGGAAGTATATAAACCCACAGCCAAAGTGGTCAGAATTCCGTGAAGCCAGTTTTGGTCACGGTGAGCTGAAGTTTGTAAACTCCACTCATGCCCTCTGGAGTTGGCACAGGAACGATGATGACAATTCAGTAAAAGTTGATGATATCTGGATAAACTCTTTGGTCAGCTCGGGATGCGTTGATCAGAAGACACGTGAACTCAGAAGTACACTTATGATACCCTAA 1320 0.4295 MEQPKHKFLLILTLLFSTVTVESEYLRPLPRKTLTIPRYSVSKAHSSYPQQVHISLAGEKHIRITWITDDKHSPSYVEYGTLPGRYDSIAEGEVTSYNYMLYTSGTIHHVVIGPLEDNTVYFYRCGGKGPDFQLKTPPNQFPVVFAVAGDLGQTGWTKSTLAHIDQSQYDVYLLPGDLSYADCMQHLWDSFGELVEPLASTRPWMVTEGNHEEENILLLTDKFVSYNSRWKMPFEESGSTSNLYYSFEVAGVHVIMLGSYEDYDVYSEQYRWLKEDLSKVDRERTPWLLVSFHIPWYNSNKAHQGAGDDMMAAIEPLLYAASVDLVIAGHVHAYERSKRVYNGRLDPCGAVHITIGDGGNREGLARKYINPQPKWSEFREASFGHGELKFVNSTHALWSWHRNDDDNSVKVDDIWINSLVSSGCVDQKTRELRSTLMIP* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0260 439 Pfam Iron/zinc purple acid phosphatase-like protein C 350 409 IPR025733 -
Vra6g0260 439 Pfam Purple acid Phosphatase, N-terminal domain 49 129 IPR015914 GO:0003993|GO:0046872
Vra6g0260 439 Gene3D - 48 139 - -
Vra6g0260 439 PANTHER PURPLE ACID PHOSPHATASE 8 429 - -
Vra6g0260 439 CDD MPP_PAPs 140 418 IPR041792 -
Vra6g0260 439 SUPERFAMILY Purple acid phosphatase, N-terminal domain 42 138 IPR008963 GO:0003993|GO:0046872
Vra6g0260 439 Gene3D - 140 427 IPR029052 -
Vra6g0260 439 PANTHER ACID PHOSPHATASE RELATED 8 429 IPR039331 GO:0003993
Vra6g0260 439 SUPERFAMILY Metallo-dependent phosphatases 142 412 IPR029052 -
Vra6g0260 439 Pfam Calcineurin-like phosphoesterase 145 334 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0260 Vra-Chr6 1943171 1945867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0260 38 426 Miscellaneous Gene Families AT2G03450 25.431 3.91e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0260 K22390 - gmx:100787977 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0260 6 1943171 1945867 Vra6g0260 6 1943171 1945867 ECH
Vra6g0260 6 1943171 1945867 Vra6g0260 6 1943171 1945867 PCT