Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0236 ATGATGGGTCAGATCGTGCGGAGGAAGAAGAAAGGGCGTCCATCCAAGACAGATCTAGCACGCCGCTCCGGTCAATCTCCGGCAGCCTCCCAGCCAGACCTACGACGGAGCCGCCGTCGCCGGAATGTGCGCTACAACATCGACTACGACGACTACCTTGACGAGGAAGATGAGGACGAGGAAGAGGACGAGAGGAGGCGCGAAAAGAAGAAGCTCAAACTAGTGGTGAAGCTCAACAACAACGAAGAAGAGGACGATGACGAGGACGACGACACGCCGAATCATGTAGGGGCGCGTGAGGTGCACGCGCAGGAGGAAAAGGGGGAAGAGGAGGAGGATGAGGGAGAAGAGGAAGAGGAGGAGGAGGAGGAAGGAAATGAGGAGGCGGAGGAGCTAGAAGAAGAGCGTCAGGCAAAAGGAAGAAAAGTGGATTCTAAAAGGCTCCACTCAGTTTCAGTATTAGGAACTCCGTCGAAGGTTCCACCTGGGATTCCGTTGCCTGACAAGAGGACCCTGGAGTTGATCCTTGACAAGCTTCAGAAGAAGGACACATATGGTGTGTATGCTGAACCAGTTGATCCAGAAGAGCTTCCTGATTATCATGATGTGATTGAGCATCCAATGGACTTTGCCACAGTGAGGAAGAAATTGGCAAATGGATCCTATCCTACCTTGGAACAATTTGAGAGTGATGTATTTTTGATTTGCTCGAATGCAATGCAATACAATGCAGCGGAGACTATATACCACAAACAGGCAAGATCGATACAAGAACTGGCTAGGAAAAAGTTTGAGAAGTTACGGTTTGACTTTGATCGCTCTCAGAGTGAGCTGAAGTCTGAACAAAAAACTAGATCTAATTCCCTGGTTAAGAAGTCAGCAAAGAAGCCGCTGGGTCATACTTCACAGGAACCAATTGGCTCTGATTTTTCGTCAGGTGCAACTCTTGCTACTATTGGAGATGTATTGCCAACATCCCATCCAATGCAAGGTGTCGTTTGTGAAAGGCCTGGAAATATTGATGGTCTTGTGGAAGGCAATGCTTTCATTATTGATGCAAGTCAAGAGAAAGCAGAAGACTACATATCAGGGAGGGGTCTGCTTTCCAAGTTGGGAAGGAAACAATCTATGCAAGATATGGAGCGTCGTGCAACTTATAATATGTCTAATCCACCAGTTACTAGATCGGATTCTGTATTTACGACATTTGAGGGTGAAGTGAAGCAGCTGGTTACTGTTGGACTTCAAGCTGAGCACTCCTATGCCAGGAGTTTGGCTCGTTTTGCTGCAACTCTAGGACCTACAGCTTGGAGAATCGCTTCCCAGAGGATTCAGCAGGCACTACCACCTGGCTGTAAATTTGGTCGTGGTTGGGTTGGAGAGTATGAACCACTTCCCACACCTGTATTAAAGCTTGATAATCTTGCCCAGCAGCAACCTATTTTGGGGACTAAGACGCAGTCTACTGCTGAGTTAATAAAGGCTGACAAAAATTGTAAGAATGTGGAATCCACCGTTGAACATCCTGTTAATGGACCAATCCATGAGGGAAAACAGTCTTCTGTGTGTTCTAGTAGTGGGCTTACATCGGATGGCAAATCATCTTTGTTTGGTTCTGCTGGATCAAGACCCAATTCTCATGACAATCTCTTTTATCCGCAGCCCAATGTCCAAACTAGGAACCTCAACAAGTCTGAGAACAAGGGTTTGAAACAAGTGGAATTGAACTCTTTACCCTCCAGTGATCAGAATAATGCCAGTCTAGTTGCAAAGCTTACAAGTAATACTCCTGCAGCAGTGTCTAAGCCCAGAGAAATGATACCTAGTAACTTGACTATTTTACCGTCTATGCCTTTCAAGCAGCCAGATACCAACGGAGTTGTTGGTGGAGAGTTGCCCAATGGAAAAGTAAGGAATACTAGTTTAAACAGACGGATGCCTGGTGCGTCATCCGAAAGTACGTCAAATCAAACAGGTAGATCAGCTCCTTTTGTTGCCCATGGACAGGAGCAGACTCTTAGTGACCCAGTTCAATTGATGAGGATGTTAGCCGAAAAGACACAAAAACAACAGACTTCTAGTTCATCCAATCATTCTCCTGCTGACACCCCACCAGTGACCCCATCAGTTCCATCGGGACGGAGAGAGGATTTGAGCAATGCTTCAGCAGCAGCTGCCCGTGCATGGATGTCTGTTGGTGCAGCAGGTTTTAAACAAGGACCTGAAATTTCTAGTTCACCCAAAAATCAGATTTCTGCAGAATCATTGTACAACCCAGCGAGAGAGTTCCATCAGCCCTTTTCACGAATTAGGGGAGAGTTTTCTCCTGGTGGAACGCCTTTCCAGTCTGAGAAGAACAATTTTCCATTTCAGGCACTTGTACCGCAATCTCAACCTATTCAACTAGTTGGTGCTTCACAGTTTCCAAACAGACCTATGGTCTTCCCTCAAGTAGCAGCTTCTGACTTGTCAAGATTTCAGATACCACCATGGCGGGGTATCCGACCTCACAGTCAACCAAGACAGAAACAGGAAACACTTCCTCCTGACCTGAACATTGGTTTCCAACCTCCTGGTTCACCTGCAAAACAATCATCTGGTGTGCTGGTTGACTCTCAGCAACCAGACCTTGCTTTGCAACTGTGA 2646 0.4675 MMGQIVRRKKKGRPSKTDLARRSGQSPAASQPDLRRSRRRRNVRYNIDYDDYLDEEDEDEEEDERRREKKKLKLVVKLNNNEEEDDDEDDDTPNHVGAREVHAQEEKGEEEEDEGEEEEEEEEEGNEEAEELEEERQAKGRKVDSKRLHSVSVLGTPSKVPPGIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLANGSYPTLEQFESDVFLICSNAMQYNAAETIYHKQARSIQELARKKFEKLRFDFDRSQSELKSEQKTRSNSLVKKSAKKPLGHTSQEPIGSDFSSGATLATIGDVLPTSHPMQGVVCERPGNIDGLVEGNAFIIDASQEKAEDYISGRGLLSKLGRKQSMQDMERRATYNMSNPPVTRSDSVFTTFEGEVKQLVTVGLQAEHSYARSLARFAATLGPTAWRIASQRIQQALPPGCKFGRGWVGEYEPLPTPVLKLDNLAQQQPILGTKTQSTAELIKADKNCKNVESTVEHPVNGPIHEGKQSSVCSSSGLTSDGKSSLFGSAGSRPNSHDNLFYPQPNVQTRNLNKSENKGLKQVELNSLPSSDQNNASLVAKLTSNTPAAVSKPREMIPSNLTILPSMPFKQPDTNGVVGGELPNGKVRNTSLNRRMPGASSESTSNQTGRSAPFVAHGQEQTLSDPVQLMRMLAEKTQKQQTSSSSNHSPADTPPVTPSVPSGRREDLSNASAAAARAWMSVGAAGFKQGPEISSSPKNQISAESLYNPAREFHQPFSRIRGEFSPGGTPFQSEKNNFPFQALVPQSQPIQLVGASQFPNRPMVFPQVAASDLSRFQIPPWRGIRPHSQPRQKQETLPPDLNIGFQPPGSPAKQSSGVLVDSQQPDLALQL* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0236 881 Coils Coil 53 73 - -
Vra6g0236 881 ProSitePatterns Bromodomain signature. 186 242 IPR018359 -
Vra6g0236 881 MobiDBLite consensus disorder prediction 636 670 - -
Vra6g0236 881 MobiDBLite consensus disorder prediction 624 670 - -
Vra6g0236 881 MobiDBLite consensus disorder prediction 132 148 - -
Vra6g0236 881 MobiDBLite consensus disorder prediction 685 722 - -
Vra6g0236 881 MobiDBLite consensus disorder prediction 1 166 - -
Vra6g0236 881 Pfam Bromodomain 174 254 IPR001487 GO:0005515
Vra6g0236 881 MobiDBLite consensus disorder prediction 858 881 - -
Vra6g0236 881 SMART bromo_6 161 269 IPR001487 GO:0005515
Vra6g0236 881 PRINTS Bromodomain signature 197 213 IPR001487 GO:0005515
Vra6g0236 881 PRINTS Bromodomain signature 213 231 IPR001487 GO:0005515
Vra6g0236 881 PRINTS Bromodomain signature 231 250 IPR001487 GO:0005515
Vra6g0236 881 MobiDBLite consensus disorder prediction 505 561 - -
Vra6g0236 881 PANTHER BROMODOMAIN CONTAINING PROTEIN 2 881 - -
Vra6g0236 881 ProSiteProfiles Bromodomain profile. 180 250 IPR001487 GO:0005515
Vra6g0236 881 MobiDBLite consensus disorder prediction 517 561 - -
Vra6g0236 881 CDD Bromodomain 168 264 - -
Vra6g0236 881 Gene3D - 98 289 IPR036427 GO:0005515
Vra6g0236 881 SUPERFAMILY Bromodomain 157 267 IPR036427 GO:0005515
Vra6g0236 881 MobiDBLite consensus disorder prediction 1 16 - -
Vra6g0236 881 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 2 881 - -
Vra6g0236 881 MobiDBLite consensus disorder prediction 92 106 - -
Vra6g0236 881 Coils Coil 101 142 - -
Vra6g0236 881 MobiDBLite consensus disorder prediction 829 881 - -
Vra6g0236 881 MobiDBLite consensus disorder prediction 107 131 - -
Vra6g0236 881 MobiDBLite consensus disorder prediction 275 310 - -
Vra6g0236 881 MobiDBLite consensus disorder prediction 685 703 - -
Vra6g0236 881 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0236 Vra-Chr6 1767316 1772892 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0236 K22184 - gmx:100799986 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0236 6 1767316 1772892 Vra6g0236 6 1767316 1772892 ECH
Vra6g0236 6 1767316 1772892 Vra6g0236 6 1767316 1772892 PCT