Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0235 ATGGGTAAAAAAGGTTATGTGGGCTGTTTCTTCTTTACTATCTATGGCTTTTTCATCTTAAAGTTTGGTTCTTCAGAGGCTAAAATGGTTCCAGCTCTGTACGTGTTTGGAGACTCACTCGTGGACGTCGGCAACAACAATTACTTGACTCTTTCCATTGCAAAGGCAAATCATCGTCACTATGGCATTGATTTTCCCACCCACAAACCCACTGGCAGATTTAGCAACGGCAAGAATGCTGCAGATTTTCTTGCTGAGAAATTGGGTTTGGCAACTTCGCCACCTTACCTCTCTCTAACATCAACGGTCAACAATGCATCTTTCATGGATGGTGTTAGCTTTGCCTCCGCAGGTGCTGGAATATTTGATGGTTCTGACTTACGATATAGACAATCAATACCGCTGAGAAAACAAGTGGACTACTACTCTATTGTGCAAGAGGAAATGACACGAGAAATAGGAGCAGCGGCTATTCAGAAACATCTCTCAAAGTCAATTTTTGTTGTGGTGATTGGCAGCAACGACCTGTTTGGATACTTTGAATCATCAGATCTACGTAAGAAAACCACCCCGCACCAGTATGTTGATTCTATGCTTCTCTCACTAAAATTACAACTACAGAGATTATACGATGATGGTGCACGTAAATTTGAGATCGCGGGAGTTGGAACACTGGGATGCTGTCCTGAATTCAGGCTGAAGAACAAAACGGAATGCGTTGTAGAAGTGAATTACTGGTCTGTAAAATATAATGAAGGCCTTCAATCGATGTTGATGGAATGGCAATCAGAGAATAAAGGGATAATCTACTCTTACTTTGACACTTATGCTGCCATCAACGACCTCATTCAGACTCCAGCTTCTTATGGATTTAGTGAGGTAAAAGGTGCTTGTTGTGGACTGGGTGAGCTGAATGCCAGGGCTCCCTGCCTGCCATTGTCAAACCTTTGTCCTAATAGACAAGATCACATCTTCTTTGACCAATTCCATCCTACGGAGGCAGCTTCTCTTATATTTGTTAATAGACTTTTCGACGGCCCTTCAGGTTACGCATCTCCCATTAATATGAGACAACTAGTAGCAGCCTGA 1089 0.4261 MGKKGYVGCFFFTIYGFFILKFGSSEAKMVPALYVFGDSLVDVGNNNYLTLSIAKANHRHYGIDFPTHKPTGRFSNGKNAADFLAEKLGLATSPPYLSLTSTVNNASFMDGVSFASAGAGIFDGSDLRYRQSIPLRKQVDYYSIVQEEMTREIGAAAIQKHLSKSIFVVVIGSNDLFGYFESSDLRKKTTPHQYVDSMLLSLKLQLQRLYDDGARKFEIAGVGTLGCCPEFRLKNKTECVVEVNYWSVKYNEGLQSMLMEWQSENKGIIYSYFDTYAAINDLIQTPASYGFSEVKGACCGLGELNARAPCLPLSNLCPNRQDHIFFDQFHPTEAASLIFVNRLFDGPSGYASPINMRQLVAA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0235 362 CDD SGNH_plant_lipase_like 31 347 IPR035669 -
Vra6g0235 362 Gene3D SGNH hydrolase 22 346 IPR036514 -
Vra6g0235 362 Pfam GDSL-like Lipase/Acylhydrolase 33 340 IPR001087 GO:0016788
Vra6g0235 362 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 14 360 - -
Vra6g0235 362 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 14 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0235 Vra-Chr6 1753398 1756944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0235 30 346 Acyl Lipid Metabolism Gene Families AT4G10950 34.783 2.77e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0235 - - gmx:100777307 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0235 6 1753398 1756944 Vra6g0235 6 1753398 1756944 ECH
Vra6g0235 6 1753398 1756944 Vra6g0235 6 1753398 1756944 PCT