Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0234 ATGGAGGACATGGACGAGATTGACGCGGTTCCTCAGGTTTACATGGCTTGCATACTAAATGGTCATAGAATAGGAGTTTCTTATTATGATTCCACCCTTCGCCAACTTTATGTACTTGAAGTTTGGGATGACGGTGACAAAGGTTTTCCAGTTATTGATCTGGTGAAATATCAAGCCAACCCATTGGTTATTTACACAAGCACTAAAAGTGAAGAATCCTTCTTGTCTGCTCTGCAACAAAAGGATGGAGTAGCTGAGTATCCTACAGTAAAGCTTGTTAAAAGTTCAATATTCAGCTACGAGCAAGCATGGCATAGATTAATTTACCTGCGAGTGGCGGGGATGGATGATGGATTAAATGTGAAGGAGAGNATTTACTATCTGAGTTCCATGATGGACATGGGAAGTGAAGTACAGGTTCGTGCTAGTGGTGGTCTTCTTGCAATACTAGAGAATGAAAGGATTGTAGATACTCTTGAACGGAAAGAATCTGGAAATACATCAATTTCAATTGATTCTGTTGCAGAAATTTCGTTAAATAACTTTCTCAAACTTGATGCAGCAGCTCATGAAGCATTACAAATATTCCAAATAGACAAGCACCCAAGCCACATGGGAATTGGTAGAGCAAAAGAAGGGTTTTCAGTGTTTGGAATGATGAATAAGTGTGTGACTCCGATGGGTAGACGTCTTTTGAGAAATTGGTTCTTAAGGCCTGTTCTTGATCTTGAAGTGCTGAACTACCGTTTAAATTCTATATCTTTTTTTCTATGCTCAGAAGAACTTGTTGCTTCATTACGGGAAACCTTGAAATCTGTGAAGGATATACCCCACTTGCTGAAGAAATTTGACTCTCCAAGCTCTACGTGCACAAGCTCTGATTGGGCAGCTCTTCTCAAGAGTATTTGTGCGCTGTTGCATGTAAACAAGATTTTTGAAGTTGGAATTTCCGAAGACCTTCGTGAAGAATTGAAGTATTTAAACTTGGACATTGTCGAGAAGGCTAGCTCATGCATAACGGCAGAACTTGGTTATGTTTATGAACTGGTAATTGGCGTTATTGATTTAAATAGAACTAAAGAGAAAGGTTATGCGACGGTTGTGAAGGAAGGTTTCTGTGACGAGTTAGATGAGCTGAGGCAAATATATGAGGAACTGCCGGAATTTCTGGAAGAGGTTTCATCCTTGGAATTGGCTCAACATCCCCGTCTATGCAAGGACAAATGTATTCCTTGCATTGTTTATATACAGCAAATAGGTTATTTAATGTGTATCTTTGAAGAAAAACCTNAAGAAACCTCTCTGGAGACACTTGTAGATTGGGAATACGCATTTTGTGACACAGATGGAGAGACAAAAAGATACTTTTATCGAACGCCAAAGACACGAGAATTGGATAGTCTGCTTGGTGATATCCATCATAAAATTCTAGATATGGAGAGGGCAATCACCAGAGATTTGTTTTCGCGTATATTGCTGTTCCAGACCCTTTTGATAAAGGTGGCAACTTTTGCAGCTGAACTGGACTGTTTTTTGTCAATGGCATTGGTTGCACGGCAGAACAATTACGTCAGGCCTTCGTTGACTGAAGAAAATTTGCTTGATATAAAAAATGGAAGGCATGTTTTGCAGGAAATGACGGTAGACACATTTATTCCTAATGACACTAAGATTCTTCATGATGGAAGAATAAATGTCATCACTGGTCCTAATTTTTCTGGAAAAAGTATCTATATAAAGCAGATTGCTATAATTGTTTTTCTCTCCCACATTGGTAGTTTTGTGCCCGCCGATGCAGCAACTGTTGGTCTAACAGATAGAATATTTTGTGCAACGGGAAGCAGGCTTATGACAGCTGAACAATCAACATTTATGATTGATCTACATCAAGTAGGGATGATGCTCAGGCATGCTACTTCGCAATCTCTGTGTTTGGTGGATGAATTTGGTAAAGGTACTCTTACAGAAGATGGCATTGGTCTACTTGCTGGAACCATAAATCATTTTGTCACGTGTCATGAACCTCCAAAGGTTTTCGTGTGCACTCATCTCATGGATTTATTGCATGGACATTCCTTGACCAAGTCTGAGCAGATTAAGTTTTACACAATGAGTATACTGAGGCCTGACGACAATTCCACATATATTGACGACATTGTATTTTTATACAGGCTTATCCCTGGACAAGCGCATCATAGCTACGGGCTGCATTGTGCGCTGCTTGCTGGTGTACCAGAGGAAATTGTAAAAAGAGCTGCTGCTGTGTTGGATGCCGTTTCAAATAATAATCATGTCGAGCGGTTATGCAATGAGAACATCTCTGCCCAAGATCGTCAATGCGAGGATGCCATGGAGAAATTGTTGGAATTCGATATTGAAAAAGGCGACTTAAAACTTTTCTTTGAGGATATATTTTCTCCAGTTCTTATTGCATCGTGA 2439 0.3977 MEDMDEIDAVPQVYMACILNGHRIGVSYYDSTLRQLYVLEVWDDGDKGFPVIDLVKYQANPLVIYTSTKSEESFLSALQQKDGVAEYPTVKLVKSSIFSYEQAWHRLIYLRVAGMDDGLNVKEXIYYLSSMMDMGSEVQVRASGGLLAILENERIVDTLERKESGNTSISIDSVAEISLNNFLKLDAAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPVLDLEVLNYRLNSISFFLCSEELVASLRETLKSVKDIPHLLKKFDSPSSTCTSSDWAALLKSICALLHVNKIFEVGISEDLREELKYLNLDIVEKASSCITAELGYVYELVIGVIDLNRTKEKGYATVVKEGFCDELDELRQIYEELPEFLEEVSSLELAQHPRLCKDKCIPCIVYIQQIGYLMCIFEEKPXETSLETLVDWEYAFCDTDGETKRYFYRTPKTRELDSLLGDIHHKILDMERAITRDLFSRILLFQTLLIKVATFAAELDCFLSMALVARQNNYVRPSLTEENLLDIKNGRHVLQEMTVDTFIPNDTKILHDGRINVITGPNFSGKSIYIKQIAIIVFLSHIGSFVPADAATVGLTDRIFCATGSRLMTAEQSTFMIDLHQVGMMLRHATSQSLCLVDEFGKGTLTEDGIGLLAGTINHFVTCHEPPKVFVCTHLMDLLHGHSLTKSEQIKFYTMSILRPDDNSTYIDDIVFLYRLIPGQAHHSYGLHCALLAGVPEEIVKRAAAVLDAVSNNNHVERLCNENISAQDRQCEDAMEKLLEFDIEKGDLKLFFEDIFSPVLIAS* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0234 812 Gene3D - 523 795 IPR027417 -
Vra6g0234 812 SMART mutATP5 562 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra6g0234 812 ProSitePatterns DNA mismatch repair proteins mutS family signature. 642 658 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra6g0234 812 PIRSF MSH2 1 798 IPR011184 GO:0005524|GO:0006298|GO:0030983
Vra6g0234 812 Pfam MutS domain III 190 515 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vra6g0234 812 SMART DNAend 211 547 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vra6g0234 812 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 21 791 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vra6g0234 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 759 IPR027417 -
Vra6g0234 812 PANTHER MUTS PROTEIN HOMOLOG 5 21 791 - -
Vra6g0234 812 SUPERFAMILY DNA repair protein MutS, domain III 186 522 IPR036187 -
Vra6g0234 812 CDD ABC_MSH5_euk 535 744 - -
Vra6g0234 812 Pfam MutS domain V 566 758 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra6g0234 812 Pfam MutS family domain IV 371 473 IPR007861 GO:0005524|GO:0006298|GO:0030983
Vra6g0234 812 Gene3D - 183 407 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0234 K08741 - gmx:100797567 1515.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0234 6 1738629 1752724 Vra6g0234 6 1738629 1752724 ECH