Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0214 ATGAAGAAAGAGAAGGTTGAGATACGGTATTTGGCACCTTGTATTTGGTTACTACTCTCTCTCACCACAATCTTCCTCCCTTTATGTCAGTCCTTCAATTATGGCCAAGCCCTGTCCCAGAGCCTACTCTATTTTGAGTCACAGCGTTCAGGACGCTTACCCTACAACCAAAGGGTCACTTGGCGTCACCATTCTGCCCTCACCGATGGCCTAGAACAAGGGGTGGATTTGGTTGGAGGGTACTATGATGCAGGGGACAATGTGAAATTTGGTTTGCCCATGGCATTCACCGTCACACTCCTCTCCTGGGCTGCCGTAGAGTACGGCCAACAAATCGCGGCTGCCGGCGAGTACGTTCACACGCTCGAGGCCATCAAGTGGGGGACTGACTATTTCATAAAGGCCCACACACACCCCAATGTTCTTTGGGTTGAGGTGGGTGACGGCTACACTGATCACTACTGTTGGCAGCGGCCGGAGGACATGACGACATCGCGGCGAGCTTACAAGGTGGATGCGGAAAACCCTGGTTCGGATGTGGCCGGTGAGACTGCGGCGGCATTGGCGGCGGCATCCATGGTGTTTAGGAGAAGAAACCCACATTACTCTGAACTACTTTTGCATCATGCAGAACAGTTGTTTGAGTTTGGTGACAAGTACAAGGGGAAGTATGACGAGAGTGTTGGAGTGGCTAAAGGGTATTATGCTTCGGTTAGTGGCTACATGGACGAGTTGCTATGGGCAGCTATTTGGCTTTATAAGGCCACACAAAAGGACCAATATTTAAACTATTTTCTGGAGAATGCTCATGACTTTGGTGGGACCACTTGGGCCATCAATGAATTCAGCTGGGATGTTAAATATGCTGGTGTTCAAACCATTGCTTCTATGTTATCGATGGAAGAAAAGAAACACAAGCAGCACGAAGTCGTACTTAAACAGTATCGTTCAAAAGCCGAGCACTATCTCTGCGCGTGCCTCAACCTCAACAACGCGAGTAACGTGGAGCGCACCCCAGGAGGGTTACTGTACACCCGCCAATGGAACAACATGCAATACGTGGCAACGGCATCGTTTCTTCTCACACTGTATTCTGATCACCTCCGAGCCACACATCAGAAGCTGCATTGCGAAAAGGGCGAGGTGGGTCCAGACGAGATGTTTGCCTTTGCGAAATCACAGGTTGATTACATCTTAGGTTCTAATCCAATGGGTATGAGTTACATGGTAGGGTACGGTCCCGATTTCCCGCAGAGGGTGCACCATAGGGGCGCATCCATAGAATCATCAAAGGAAAACAAGGGTTTTATCGGGTGCATCCAGGGTTATGATAGCTGGTATGGACGCGTTGAAGCCAATCCAAATGTACTAACTGGGGCCGTGGTTGGTGGGCCTGACATGAATGACGAATTTAAAGACGAGAGATCAAATTACATCCAAACAGAGGCTTGCACCTACAATACTGCCGCTTTAGTAGGGGTTTTTGCTAGATTGCATCAATCACATGGTGATGTTTATTTATTATCTTCCTCTTTGATAGCTTCTAGCTAA 1551 0.4861 MKKEKVEIRYLAPCIWLLLSLTTIFLPLCQSFNYGQALSQSLLYFESQRSGRLPYNQRVTWRHHSALTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTVTLLSWAAVEYGQQIAAAGEYVHTLEAIKWGTDYFIKAHTHPNVLWVEVGDGYTDHYCWQRPEDMTTSRRAYKVDAENPGSDVAGETAAALAAASMVFRRRNPHYSELLLHHAEQLFEFGDKYKGKYDESVGVAKGYYASVSGYMDELLWAAIWLYKATQKDQYLNYFLENAHDFGGTTWAINEFSWDVKYAGVQTIASMLSMEEKKHKQHEVVLKQYRSKAEHYLCACLNLNNASNVERTPGGLLYTRQWNNMQYVATASFLLTLYSDHLRATHQKLHCEKGEVGPDEMFAFAKSQVDYILGSNPMGMSYMVGYGPDFPQRVHHRGASIESSKENKGFIGCIQGYDSWYGRVEANPNVLTGAVVGGPDMNDEFKDERSNYIQTEACTYNTAALVGVFARLHQSHGDVYLLSSSLIASS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0214 516 Pfam Glycosyl hydrolase family 9 34 494 IPR001701 GO:0004553|GO:0005975
Vra6g0214 516 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 397 423 IPR018221 -
Vra6g0214 516 Gene3D - 30 502 IPR012341 GO:0005975
Vra6g0214 516 PANTHER ENDO-1,4-BETA-GLUCANASE 13 505 - -
Vra6g0214 516 PANTHER ENDOGLUCANASE 13 505 - -
Vra6g0214 516 SUPERFAMILY Six-hairpin glycosidases 31 504 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0214 Vra-Chr6 1598800 1601299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0214 14 497 Glycoside Hydrolase AT2G32990 72.065 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0214 - - gmx:100786912 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0214 6 1598800 1601299 Vra6g0214 6 1598800 1601299 ECH