Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0213 ATGGCTACTCTACCATTCTCCTTCTTCTTCCTTCTTATCTCATTCTTTTCTTCATCATCAGAAGCGGGGTCCGTAGGAGTAAACTATGGAAGGTTGGCGAACGACCTGCCTACACCGGCGAAGGTGGTCGAGCTTCTAAAGAGTCAGGGGCTGAACCGTGTGAAGCTGTACGACACCGACGCCACCGTGTTAACGGCGTTTGCTAACTCGGGAATCAAGGTGACGGTTGCCATGCCAAACGAGCTTCTCTCGAACGCCGCGGCGGACCAGTCCTTCACCGACGCATGGGTGAAAGATAACATCTCTAAATACTACCCAACCACGCAAATCGAAGCCGTCGCTGTGGGCAACGAAGTGTTTGTTGACCCCAATAACACGACCAAGTTTCTCGTAGAGGCAATGAAGAACGTGTTAGCTTCCTTAACTAAGTACAACCTCAACACCAACATCAAAATCTCCTCTCCCATCGCACTCTCCGCGCTCCAAAGCTCCTTCCCCGCATCATCCGGTTCCTTCAAAACCGAACTGGTCGAACCGGTTATTAAACCCATGCTCGACCTCCTCCGCCAAACCGGTTCCCCTCTCATGGTGAACGCCTACCCGTTTTTCGCGTACTCAGCAAACGCTGATAAAATTTCCTTGGACTACGCTCTTTTCAAGGAGAACGCCGGCGTGGTTGATTCCGGTAACGGTTTGAAATACACCAACCTTTTCGACGCTCAAATCGACGCCGTTTTCGCTGCCATGTCAGCGCTTCAATACAACGACGTTAAGATCACAGTTTCCGAGACGGGTTGGCCTTCCGCGGGAGACTCGAATGAAATTGGAGCGGGTCCAGAGAATGCGGCTGCGTACAACGGGAACTTGGTTCGGCGCGTGTTGGGCCAGAACGGGACCCCCTTGAAGCCCAATGAGTCCGTCGACGTTTTTCTCTTCGCGCTTTTCAACGAGAATCAGAAAACAGGGCCTACGTCCGAAAAAAATTACGGATTGTTTTACCCAAACGAGAAGAAGGTTTACGATATTCCGCTGACGGCGGAGGGTGTTAAGAACGAGCCGTCTTCAGGCGTGGGGAAGAACCAGGTTCCGGCGAGTGGGGAGGTATCGACGACGTCGCATCAGGGTCAGACCTGGTGCGTGGCGAATGGCGGTTCTTCCGAGGAGAAGCTTCAGAACGGTCTTAACTACGCTTGTGGAGAGGGTGGAGCTGATTGCACTAGCATTCAACCAGGTGCCACGTGTTACAATCCTAACACGTTGGAGGCGCATGCTTCTTACGCTTTCAACAGTTACTATCAGAAGAAAGCACGTGCCGCTGGCACCTGCGATTTTGGTGGAACCGCCTATGTTGTCACCCAGCCTCCTAAGTATGGGACCTGCGAATTTCCCACTGGATACTGA 1401 0.5239 MATLPFSFFFLLISFFSSSSEAGSVGVNYGRLANDLPTPAKVVELLKSQGLNRVKLYDTDATVLTAFANSGIKVTVAMPNELLSNAAADQSFTDAWVKDNISKYYPTTQIEAVAVGNEVFVDPNNTTKFLVEAMKNVLASLTKYNLNTNIKISSPIALSALQSSFPASSGSFKTELVEPVIKPMLDLLRQTGSPLMVNAYPFFAYSANADKISLDYALFKENAGVVDSGNGLKYTNLFDAQIDAVFAAMSALQYNDVKITVSETGWPSAGDSNEIGAGPENAAAYNGNLVRRVLGQNGTPLKPNESVDVFLFALFNENQKTGPTSEKNYGLFYPNEKKVYDIPLTAEGVKNEPSSGVGKNQVPASGEVSTTSHQGQTWCVANGGSSEEKLQNGLNYACGEGGADCTSIQPGATCYNPNTLEAHASYAFNSYYQKKARAAGTCDFGGTAYVVTQPPKYGTCEFPTGY* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0213 466 MobiDBLite consensus disorder prediction 350 370 - -
Vra6g0213 466 Pfam Glycosyl hydrolases family 17 25 342 IPR000490 GO:0004553|GO:0005975
Vra6g0213 466 Gene3D Glycosidases 23 351 - -
Vra6g0213 466 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 459 IPR044965 GO:0004553|GO:0005975
Vra6g0213 466 Gene3D - 371 462 - -
Vra6g0213 466 SMART X8_cls 377 462 IPR012946 -
Vra6g0213 466 Pfam X8 domain 377 448 IPR012946 -
Vra6g0213 466 PANTHER BNAA10G09420D PROTEIN 17 459 - -
Vra6g0213 466 MobiDBLite consensus disorder prediction 354 370 - -
Vra6g0213 466 SUPERFAMILY (Trans)glycosidases 25 342 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0213 Vra-Chr6 1590487 1592419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0213 20 455 Glycoside Hydrolase AT5G55180 72.936 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0213 - - gmx:100803406 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0213 6 1590487 1592419 Vra6g0213 6 1590487 1592419 ECH