Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0210 ATGGAGTTCGACCCGATCCCAATCGGTTCGTGCTCCAAAGAACACCAGGCGATCTACAAGGACTGGTTCAATTGCGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGATGCCACCAAATTTTTCTCCATGTCCAACTTGTCTCGCCAAGATCTTAAGCAGGTGTGGGCTATTGCAGATACAAAGCGGCAAGGATATCTTGGTTTCTCTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGGTACTCAATAACACCTGATTTGCCGACTAGTGATGTTGATTTTACAAATCTGGAACCTCCTGTAATGGATGGTTTGGATGCATTACTAGCTAAGAAAAAGCATAAACATAAAGAAGTTGAAACAAATGGTAGTTCTCAATTGCAGCCATCACCATCGAAAAATTGGTTTTCTTCAAAATCAACTAAAAAGGTGCCTCTTTCCTCAGTGACATCAATAATTGATGGCTTGAAGAGACTCTACCTTAACAAGTTGAAGCCGTTAGAAGCCACTTACCGTTTTAATGATTTTGTATCACCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGGAGCCCATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGACGAGAGAACTGTTCCTGGAAATACCGTCGCCGTCCAAGCAGACATGCCATTTAGTGGCCTTACAACTTTTGGCACAGCATTCTTGTCAAAATTTGTGTGTTCACAGATGCCTCATCCTCTTCTAGAACACATCACATTTGTTGACACTCCTGGAGTTTTGTCTGGAGAAAAGCAAAGGACACAACGGGCATATGATTTTACGGGCGTCACATCTTGGTTTGCTGCCAAGTGCGATTTGATACTGTTATTGTTTGATCCTCACAAACTTGACATTAGTGACGAGTTCAATCGTGTGATATCATCCTTACGAGGACATGATGACAAAATCCGAGTAGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGCGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGTGTGTATATTGGCTCCTTCAATGACATGCCTGTAAATGATGCTGCCACTGGTCCACTTGGTAAGGAACTATTTGAAAAGGAACAGGATGATCTTCTTTCGGATCTGAAAGATATACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGAGCCCGAGCAGCCAAGATACATGCGTATATTATCAGTCATCTAAAAAAGGAGATGCCTGCTATGATAGGCAAATCTAAAGCTCAGCAAAAGCTCATTGATAATTTGGCAGCTGAATTTGGAAAGGTGCAAAGGGAGTTCCATTTACCTCCTGGTGATTTCCCAAATGTAGAGTATTTTAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAACCAAAGATGATACAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAACCTCTTGAAGAATTTTAGGAATCCCTATGATTAA 1632 0.4093 MEFDPIPIGSCSKEHQAIYKDWFNCADSDSDGRITGSDATKFFSMSNLSRQDLKQVWAIADTKRQGYLGFSEFIIAMQLVSLAQSGYSITPDLPTSDVDFTNLEPPVMDGLDALLAKKKHKHKEVETNGSSQLQPSPSKNWFSSKSTKKVPLSSVTSIIDGLKRLYLNKLKPLEATYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGSDERTVPGNTVAVQADMPFSGLTTFGTAFLSKFVCSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDMPVNDAATGPLGKELFEKEQDDLLSDLKDIPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKSKAQQKLIDNLAAEFGKVQREFHLPPGDFPNVEYFRERLSGYNIDKFEKLKPKMIQAVDDMLAYDIPNLLKNFRNPYD* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0210 543 ProSiteProfiles EH domain profile. 15 96 IPR000261 GO:0005515
Vra6g0210 543 Pfam Domain of unknown function (DUF5600) 433 534 IPR040990 -
Vra6g0210 543 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 192 428 IPR030381 GO:0005525
Vra6g0210 543 MobiDBLite consensus disorder prediction 124 145 - -
Vra6g0210 543 Gene3D - 162 534 - -
Vra6g0210 543 CDD EHD 197 441 - -
Vra6g0210 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 464 IPR027417 -
Vra6g0210 543 MobiDBLite consensus disorder prediction 128 145 - -
Vra6g0210 543 Gene3D - 198 426 IPR027417 -
Vra6g0210 543 CDD EH 19 85 IPR000261 GO:0005515
Vra6g0210 543 Pfam Cytoskeletal-regulatory complex EF hand 19 80 IPR000261 GO:0005515
Vra6g0210 543 Pfam N-terminal EH-domain containing protein 161 193 IPR031692 -
Vra6g0210 543 Gene3D - 10 108 - -
Vra6g0210 543 SMART eh_3 8 103 IPR000261 GO:0005515
Vra6g0210 543 PANTHER OS02G0158100 PROTEIN 18 541 - -
Vra6g0210 543 PANTHER EH DOMAIN 18 541 - -
Vra6g0210 543 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Vra6g0210 543 SUPERFAMILY EF-hand 11 97 IPR011992 -
Vra6g0210 543 Pfam Dynamin family 198 357 IPR045063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0210 Vra-Chr6 1564232 1572947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0210 1 543 EF-hand Containing Proteins AT3G20290 81.835 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0210 K12483 - gmx:100804468 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0210 6 1564232 1572947 Vra6g0210 6 1564232 1572947 ECH