Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0209 ATGTTAGTCCACAAGGTTTTGTCCCGTGTGTCCACCAACGTTTCTCGGACTTCTTTTACCTCTGCTTCGAAATGGCCCCAACACTTCTCCAATCACTCACATTCCCTCATTCAGCAATCTCCCAACAAGGAGCCTCTTTCCTCAGTGACATCAATAACTGATATCTTGAAGAGCCTCTACCTTGACAAGTCAATAATTGATGGCTTGAAGAGACTCTATCGTCAGAAGTTGAAGCCGTTAGAAGTCACTTACCGTTTTAATGATTTTGTATCACCATTAATGACAGATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATGTGCTTAAAAGTAGTTATCCAGGAGCCCATATTGGACCCGAGCCAACAACTGATAAGTTTATTGTTGTCATGTCTGGATCTGACGAGAAAACTGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACCTGCCATTTAGTGGCCTTAAAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTGCACAGATGCCTCATCCTCTACTAGAACAGATCACATTTGTTGACACTCCTGGAGTTTTGTCCGGAGAAAAGCAAAGGACACAACGGGCATATGATTTTACGGGCGTGACATCTTGGTTTGCTGCCAAGTGCGATTTGATACTCTTATTGTTTGATCCTCACAAACTTGACATTAGTGACGAGTTCAGTAATGTGATATCATCCTTACGGGGACATGATGACAAAATTCGATTAGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGCGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGTGTGTATATTGGCTCCTTCAATGACATGCCTGTAAATGATGCTGCCACTGGTCCACTTGGTAAGGAACTGTTTGAAAAGGAACAGGATGATCTTCTTTCGGATCTGAAAGATATACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGAGCCCGAGCAGCCAAGATACATGCCTATATTATCAGTCATCTTAAAAATGAGATGCCTTTTATGATAGGCAAATATGAAGCTCAACATAGGCTCATTGATAATTTGGCAGCTGAATTTGGAAAGGTGCAAAGGGAGTTCCATTTACCTCCTGCTGATTTCCCAAATGTAGACGATTTTAGAGAGAGATTGAGTGGTTACAATTTTGATAACTTTGCAAAATTCAAACCAAGGATGATTCAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAACCTCTTGAAGAATTTTAGGAATTCTCATGATTAA 1353 0.4065 MLVHKVLSRVSTNVSRTSFTSASKWPQHFSNHSHSLIQQSPNKEPLSSVTSITDILKSLYLDKSIIDGLKRLYRQKLKPLEVTYRFNDFVSPLMTDSDFDAKPMVMLLGQYSTGKTTFIKHVLKSSYPGAHIGPEPTTDKFIVVMSGSDEKTVPGNTVAVQADLPFSGLKTFGTAFLSKFVCAQMPHPLLEQITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFSNVISSLRGHDDKIRLVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDMPVNDAATGPLGKELFEKEQDDLLSDLKDIPKAACDRRINEFVKRARAAKIHAYIISHLKNEMPFMIGKYEAQHRLIDNLAAEFGKVQREFHLPPADFPNVDDFRERLSGYNFDNFAKFKPRMIQAVDDMLAYDIPNLLKNFRNSHD* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0209 450 Pfam Dynamin family 105 264 IPR045063 -
Vra6g0209 450 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 99 335 IPR030381 GO:0005525
Vra6g0209 450 PANTHER CALCIUM-BINDING EF HAND PROTEIN 64 448 - -
Vra6g0209 450 Pfam N-terminal EH-domain containing protein 68 100 IPR031692 -
Vra6g0209 450 Pfam Domain of unknown function (DUF5600) 340 441 IPR040990 -
Vra6g0209 450 PANTHER EH DOMAIN 64 448 - -
Vra6g0209 450 Gene3D - 69 441 - -
Vra6g0209 450 CDD EHD 104 348 - -
Vra6g0209 450 Gene3D - 105 333 IPR027417 -
Vra6g0209 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 371 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0209 Vra-Chr6 1558501 1562237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0209 64 450 EF-hand Containing Proteins AT3G20290 84.238 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0209 K12483 - gmx:100804468 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0209 6 1558501 1562237 Vra6g0209 6 1558501 1562237 ECH