Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0208 ATGTTTGTCCATAAGTTTTTGTCGCGTGTGTCCACCACCTTTTCCCGGACCTCTTTTCTCTCTGCTTCCAAAACTCCCCAACACTTCTCCAATCACTTACATTCCCTCATTCACCAATCTCCCAACAAGTTGATTCCTGTTCAAGTCAATTTGTCACTGCTACGGATAAGTTCATCAACTCCAAGATGTGGGTTTTCTTCATCAGCTTCAAGTGAAACTAATGACAAGGAAAAAGGGAAGAATATGGATATTGAAGATTCTACAAATGATAACCCTGATAAAGCAAACGAAAAGGTCAATAATTTTGAACAGGCCGGACAAGCTAAATCTGCAGATAAATCAGAGGAATCAAGTTCTATTTTGGATTCTCAATCTCAAACTGTAAAAGGAAGGAGGAGAGGTTTCAAACGAACAGCATTTTCTGATTCTGATTCAGATTCAGATTCAGAGAATGAATATCTGTCCAAGGATGATTTGATTAAACTTGTGGCTGAGAAAGAAGAACTTTTGAAGTTAAAGCACAAGGAGATTGAACAAATGCAGGATAAAGTTTTGCGTACATATGCAGATATGGAGAATATCATGGATAGGACACGACGTGAATCAGAGAATTCGAAAAAGTTTGCTGTACAGAACTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGAAAGTTTTTCAAAAATTGATACACCTAGTGACTCTGCTGAAGCGGTAAAACTTCTGAAAACACTTCTGCAAGGTGTTGAAATGACCGAGAAACAATTATCAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACGAATGAGCCCTTTGATCCACACAGACATAATGCCGTCTTTCAAATCCCTGATGGTTCTAAGCCTCCAGGAACCGTTGCAGCTGTTCTGAAGGCAGGATACATGCTTTATGATCGTGTCATTCGCCCAGCGGAAGTTGGTGTGACTCAAGCACTGAAGGAAGATGAGAATAAGGGTTCATAG 1020 0.3951 MFVHKFLSRVSTTFSRTSFLSASKTPQHFSNHLHSLIHQSPNKLIPVQVNLSLLRISSSTPRCGFSSSASSETNDKEKGKNMDIEDSTNDNPDKANEKVNNFEQAGQAKSADKSEESSSILDSQSQTVKGRRRGFKRTAFSDSDSDSDSENEYLSKDDLIKLVAEKEELLKLKHKEIEQMQDKVLRTYADMENIMDRTRRESENSKKFAVQNFAKSLLDVADNLGRASSVVKESFSKIDTPSDSAEAVKLLKTLLQGVEMTEKQLSEVLKKFGVEKFDPTNEPFDPHRHNAVFQIPDGSKPPGTVAAVLKAGYMLYDRVIRPAEVGVTQALKEDENKGS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0208 339 MobiDBLite consensus disorder prediction 73 97 - -
Vra6g0208 339 PRINTS GrpE protein signature 185 201 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra6g0208 339 PRINTS GrpE protein signature 281 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra6g0208 339 PRINTS GrpE protein signature 308 327 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra6g0208 339 Pfam GrpE 163 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra6g0208 339 MobiDBLite consensus disorder prediction 98 128 - -
Vra6g0208 339 Gene3D - 155 272 IPR013805 -
Vra6g0208 339 PANTHER GRPE PROTEIN HOMOLOG 124 329 - -
Vra6g0208 339 PANTHER GRPE PROTEIN HOMOLOG 22 99 - -
Vra6g0208 339 Coils Coil 163 183 - -
Vra6g0208 339 CDD GrpE 178 327 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra6g0208 339 Gene3D Head domain of nucleotide exchange factor GrpE 273 328 IPR009012 GO:0006457
Vra6g0208 339 MobiDBLite consensus disorder prediction 59 152 - -
Vra6g0208 339 Hamap Protein GrpE [grpE]. 96 329 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra6g0208 339 ProSitePatterns grpE protein signature. 284 327 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra6g0208 339 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 165 273 IPR013805 -
Vra6g0208 339 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 274 329 IPR009012 GO:0006457
Vra6g0208 339 MobiDBLite consensus disorder prediction 135 152 - -
Vra6g0208 339 PANTHER GRPE PROTEIN 22 99 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vra6g0208 339 PANTHER GRPE PROTEIN 124 329 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0208 Vra-Chr6 1551226 1556328 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0208 K03687 - gmx:100803396 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0208 6 1551226 1556328 Vra6g0208 6 1551226 1556328 ECH