Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0193 ATGGAACTCTGTACTCAAACCTTTACAAGTTTTCTTCTTCCCAATTCGTTTATCTCTTCAAACAAAATTCTTCTCCTTGCTAATGCCAACACTTCAGTCTTCAAATTCAATTCCCTTAAACTTTTTGCACCTCATGATCATCTCTTTCAACCCTTTATCTCTCGTTACAATTCTTTCTCTTCCCCTTTCACAGTCTCAGCTGCTTCTTCCTCTTCCTCAGTCGCAGTTGGCACAGAACAGGACCGTCTTCCAGCAGAACTGAAGGTTACAGAAACAGAGCAACTCAATTCCACTGTTAAATTGCATGTGGAGGTACCACCATTGGTATGTGAGGATTGTTACAAAAGGGTCATAGCAGAGTTTATGAAGCAAGCAAAGGTCCCTGGATTTCGTCCGGGAAAGAAAGTTCCAGAAGAGATTCTTATTGGTTATGTTGGGAGACAAAATGTCCAGAAGGCTACTATTGAATCTATTTTAAGAAGGACACTTTCACATGCTATGACATCGGTTACTGGGAGGGCTTTGCAGGACTCAGTACGCATAGTTACTAAGTTTTCTGAGATGGAGGAGACATATTCTTCTCTTGGGTCTCTTAGATATGATGTGATTGTTGATGTTGCACCAGAAATCAAATGGATTCCTGATAATAATGCATACAAAAATTTAAAGATTGATGGAGACAAGGTATTACCAGGTTTCCTTGATTCAATAATTGGAATTCATCGAGGTGAATCAAAGTCTTTTCCTCTTGTATTTCCTGAAAATTGGAAGCAAGAAAATCTTCGAGGTGTTCATGCTCAGTTTAATGTTGAATGCAAAGAACTTTTTTACAGAGATTTGCCAGAACTGGATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCAGCACAGTGGAGCAGGTCAAAGACTTATTGTTACAGAGATGCCTAGAGGTGGAGCAAACAGCTAGAGAACAAGCAACTGATAATGCTATCTTAGATCAGATTTCTAAGATGGTTGAAGTTGATATACCTCAATCCTTGTTTGAGGAACAAGGTAGGCAGCTTTATGGAGCCAACCTATTAGAAATACAGGCAAAAATGAAACTAAATGAGCAACAGCTGGCATCTCTCTCAAGTCCAAAGGCTGTGAACCAATATCTTGAGCATCAGAAGGAAAATATAACAAATTTGATAAAACAGAATCTGGCAGTGGGTGATATATATAGGCGTGAAAATCTGCAGTTTGCTACCGAGGATCTCGTCAAAGAGGTTGAGAATTCCGTTGCTGAATTCAAACGTCAAAATCAAGAATATGATGAGGAACGGGTGAAGGATCAGGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATGTAGAGATTCAATACATAACTAGATGA 1398 0.3927 MELCTQTFTSFLLPNSFISSNKILLLANANTSVFKFNSLKLFAPHDHLFQPFISRYNSFSSPFTVSAASSSSSVAVGTEQDRLPAELKVTETEQLNSTVKLHVEVPPLVCEDCYKRVIAEFMKQAKVPGFRPGKKVPEEILIGYVGRQNVQKATIESILRRTLSHAMTSVTGRALQDSVRIVTKFSEMEETYSSLGSLRYDVIVDVAPEIKWIPDNNAYKNLKIDGDKVLPGFLDSIIGIHRGESKSFPLVFPENWKQENLRGVHAQFNVECKELFYRDLPELDDSIADKLLPGCSTVEQVKDLLLQRCLEVEQTAREQATDNAILDQISKMVEVDIPQSLFEEQGRQLYGANLLEIQAKMKLNEQQLASLSSPKAVNQYLEHQKENITNLIKQNLAVGDIYRRENLQFATEDLVKEVENSVAEFKRQNQEYDEERVKDQVQEILEGAKVLEWLREHVEIQYITR* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0193 465 Pfam Bacterial trigger factor protein (TF) 89 225 IPR008881 GO:0006457|GO:0015031
Vra6g0193 465 Gene3D - 282 414 IPR037041 GO:0006457|GO:0015031
Vra6g0193 465 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 283 461 IPR027304 -
Vra6g0193 465 Gene3D - 85 212 IPR036611 GO:0006457|GO:0015031
Vra6g0193 465 Coils Coil 415 435 - -
Vra6g0193 465 Gene3D - 221 281 IPR046357 GO:0003755
Vra6g0193 465 Pfam Bacterial trigger factor protein (TF) C-terminus 297 454 IPR008880 GO:0006457|GO:0015031
Vra6g0193 465 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 226 464 - -
Vra6g0193 465 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 71 224 - -
Vra6g0193 465 PIRSF Trigger_factor 87 229 IPR005215 GO:0015031
Vra6g0193 465 PIRSF Trigger_factor 219 465 IPR005215 GO:0015031
Vra6g0193 465 SUPERFAMILY FKBP-like 222 284 - -
Vra6g0193 465 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 226 464 IPR005215 GO:0015031
Vra6g0193 465 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 71 224 IPR005215 GO:0015031
Vra6g0193 465 SUPERFAMILY Trigger factor ribosome-binding domain 87 215 IPR036611 GO:0006457|GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0193 Vra-Chr6 1415943 1421744 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0193 K03545 - gmx:100805543 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0193 6 1415943 1421744 Vra6g0193 6 1415943 1421744 ECH