Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0190 ATGGCCAACGAAAACGAACCTGCGAAGCTGCTGTTACCATATCTTCAACGCGCCGATGAATTGCAAAAGCACGAACCACTCGTCGCTTATTACTGTCGATTATATGCGATGGAACGGGGGTTGAAGATTCCGCAAAGTGAGCGCACAAAGACCACTAATGCTCTTCTTGTCTCGCTCATGAAGCAGCTTGAGAAGGATAAAAAGTCCATCCAGATAGGGCCTGAGGACAATCTATATCTCGAGGGTTTTGCTTTGAATGTGTTTGGAAAGGCAGACAAACAAGATCGTGCTGGAAGAGCAGATTTGAATACAGCGAAAACATTTTATGCTGCCAGCATCTTTTTTGAGATTCTTAATCAATTTGGAGCAGTTCAGCCTGATCTGGAGCAGAAACAGAAATATGCAGTGTGGAAAGCAGCTGATATAAGAAAAGCTTTGAAAGAAGGAAGAAAGCCCACAGCTGGTCCGCCTGCTGGTGATGAGGATCTGTCAATTCCATTCAGTTCTTCAAGCGGTAGATATGACCCTGGGACTACTGAAACTACAGTTTCCAATCCTGGACCAGAATCTGATTCATCACCTAGTTATCATAATCCCGTCAATTACCAGAATCCAAACATTCATCCGGCTCCTAAATTTCATGATACTGTTAATGAACAGCATTCTGCAAATATTCCACCATCTATGCAATTTCATGACAGAGTAGATAACAACAAGCATTCTTCTGTTGTTTCTCCATCATCTCACTCTTATACACCTGGAGTTTATCCTTCCCAAGACTATCCTCCTCCTCCTCCACCTTCCCAAGACTATCATCCTCCTCCACCTTCCCAAGACTATCATCCTCCTCCACCTTCCCAAGACTTTCATTCTCCTCCACCTTCCCAGGATTATCATTCTCCTCCCCCTTCCCAGGACTATCATCCTCCACCACCTTCCCAAGATTATCATCCTCCACCGTCATCCCAAGATTACCATCCTCCACCTGCCAGATCAGAAAGTTCTTATCCCGAACATTACAACCATCAGCAATACTCATCGGAGAATTCACAGCATTTAGGGCCTAACTACCCTTCTCATGAAAATTCGTCATATTCCTATCCCCATTTTCAGTCTTATCCAAGTTTTTCAGAAAGCAGCATCCCATCAGTCCCATCAAACTATACTTATTATCAAGGGTCGGATGCTTCATATTCTTCCCAGTCAGCTCCGCTAACTACAAGCCATTCATCAAGTGCTCATCACAGCTCTAGCAGCAGGAATGGAACTATTGTGGAACCTAAATCAACTTCTCAGACATACCATTATGACAGTAACTACCAGCCAGCACCTGAAAAAATAGCAGAGGCACACAAGGCTGCAAGATTTGCTGTTGGAGCACTTGCATTTGATGATGTCTCAATTGCAGTAGACTACTTGAAGAAATCACTTGAGTTGCTGACAAATCCATCCGCTGGCCAGTAA 1464 0.4399 MANENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTNALLVSLMKQLEKDKKSIQIGPEDNLYLEGFALNVFGKADKQDRAGRADLNTAKTFYAASIFFEILNQFGAVQPDLEQKQKYAVWKAADIRKALKEGRKPTAGPPAGDEDLSIPFSSSSGRYDPGTTETTVSNPGPESDSSPSYHNPVNYQNPNIHPAPKFHDTVNEQHSANIPPSMQFHDRVDNNKHSSVVSPSSHSYTPGVYPSQDYPPPPPPSQDYHPPPPSQDYHPPPPSQDFHSPPPSQDYHSPPPSQDYHPPPPSQDYHPPPSSQDYHPPPARSESSYPEHYNHQQYSSENSQHLGPNYPSHENSSYSYPHFQSYPSFSESSIPSVPSNYTYYQGSDASYSSQSAPLTTSHSSSAHHSSSSRNGTIVEPKSTSQTYHYDSNYQPAPEKIAEAHKAARFAVGALAFDDVSIAVDYLKKSLELLTNPSAGQ* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0190 487 MobiDBLite consensus disorder prediction 257 326 - -
Vra6g0190 487 MobiDBLite consensus disorder prediction 336 439 - -
Vra6g0190 487 Gene3D Immunoglobulin FC, subunit C 443 482 - -
Vra6g0190 487 Pfam Vta1 C-terminal domain 444 481 IPR041212 -
Vra6g0190 487 MobiDBLite consensus disorder prediction 164 205 - -
Vra6g0190 487 MobiDBLite consensus disorder prediction 148 440 - -
Vra6g0190 487 MobiDBLite consensus disorder prediction 240 255 - -
Vra6g0190 487 Gene3D - 4 152 IPR023175 -
Vra6g0190 487 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 322 IPR044538 GO:0032511
Vra6g0190 487 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 303 485 IPR044538 GO:0032511
Vra6g0190 487 Pfam Vta1 like 13 148 IPR039431 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0190 1 118 Glycosyltransferase AT2G31960 25.984 1.08e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0190 K12199 - gmx:100783739 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0190 6 1394046 1397093 Vra6g0190 6 1394046 1397093 ECH