Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0175 CTGTCTGATTTCCCCGTTACTGCATTTGAAGCAATAGGTTGCTTTTCTCAGTTAGGCACGAATGCCACGAAACGAGGTACAGATAAAACTTTGATTATCTCAAAATATGGAGCAAGTGGTGATTATCCTGCTTGTACCGACTTAGCATATAATAAGGCCATAGAGTANGGTGTGGATGTTCTTGACTGTCCGGTTCAAATATCAAAGGATGGAACACCATTTTGCTTAAACTCCATTGATCTTATAGAGAGTACGACAGTTGCCCAATCAAGCTTTAGCAAATTTGCCATGACTATCCCTCAGATCAAATCCGGCAGTGGCATATTTGCATTCAACCTCACGTGGAGTGATATAAAATCTTTGACCCCCTCAATATTGACTCCTTTTTCAAAATACAGATTGTTCAGGAATCCAGAATCTAAGAATTTAGGGTATTTGGTGGCGTTATCAGATTTCTTGTCCTTGACAAAAAGTCACCCTTCTCTATCTGGTGTCTCTATCGCTGTTGAGAATGCAGCCTATCTTGCTGAGAAGCAAGGATTAAATGTGATTGATGCAGTAATCAATGCTTTGAGCGAGGCGGGTTATGATAAACCCGGATCCCAAAAGGTTTATATCCAATCCACTGATAGTTCTGTACTGCTAAAGTTCAAAGAGAAAACTAGTTATGAGCTCGTGTACAAGATTGACGAGACTGTCGGTGATGCTGCTAATGCAGCTGTTGAGGATATAAAGAAATTTGCTAGTGCTGTGATTGTCAAGAAGAACTCTGTATTTTCTGATAGTAATCTATTCCTCACAAGCACTACAAAAACTGTGCCGAAGCTAAACGCTGCCAACCTCTCAGTTTTTGTAGAGACATTCAGCAATGAGTTTGTTTCTCAAGCGTGGGATTTCCTCTCAGATGCAACTGTTGAGATAAACTCATATCTAAATGCTAAGGGCCTAAAAATTGATGGTATCATCACAGACTTCCCTAAAACTGCCGACAGATACAGAAGGAACAAATGCTTAAATTTGGGTGACAAGAGACCTACTTACATGGACCCTGTTCAACCAGGTGGTCTTTTTTCTCTCATTACCCCAGACTACTTGCCTCCAGCTCAAGCTCCACTCCCACCCTTGACAGAATCTGAAGTTGCAGAGCCACCTTTGCCTCCTGTTGCTAAAATAGCCCAAGTTTCCAGCCCCAGTTCTGGAACCCCAGCACCACAAGGAAATGCACAGGCTAAGGTTGCTGTCTGCTTCTTCTTTTCCTCTCTGGCTGTGTTCATAGCTTCCCTTCTTCTGCATTGA 1296 0.4213 LSDFPVTAFEAIGCFSQLGTNATKRGTDKTLIISKYGASGDYPACTDLAYNKAIEXGVDVLDCPVQISKDGTPFCLNSIDLIESTTVAQSSFSKFAMTIPQIKSGSGIFAFNLTWSDIKSLTPSILTPFSKYRLFRNPESKNLGYLVALSDFLSLTKSHPSLSGVSIAVENAAYLAEKQGLNVIDAVINALSEAGYDKPGSQKVYIQSTDSSVLLKFKEKTSYELVYKIDETVGDAANAAVEDIKKFASAVIVKKNSVFSDSNLFLTSTTKTVPKLNAANLSVFVETFSNEFVSQAWDFLSDATVEINSYLNAKGLKIDGIITDFPKTADRYRRNKCLNLGDKRPTYMDPVQPGGLFSLITPDYLPPAQAPLPPLTESEVAEPPLPPVAKIAQVSSPSSGTPAPQGNAQAKVAVCFFFSSLAVFIASLLLH* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0175 431 CDD GDPD_SHV3_repeat_2 31 332 - -
Vra6g0175 431 Gene3D Phosphatidylinositol (PI) phosphodiesterase 29 332 IPR017946 GO:0006629|GO:0008081
Vra6g0175 431 Pfam Glycerophosphoryl diester phosphodiesterase family 37 328 IPR030395 GO:0006629|GO:0008081
Vra6g0175 431 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 1 430 - -
Vra6g0175 431 SUPERFAMILY PLC-like phosphodiesterases 28 333 IPR017946 GO:0006629|GO:0008081
Vra6g0175 431 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 1 430 - -
Vra6g0175 431 ProSiteProfiles GP-PDE domain profile. 30 333 IPR030395 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0175 Vra-Chr6 1283364 1287403 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0175 1 411 Receptor kinase-like Gene Family AT1G66970 55.875 2.43e-155 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0175 - - vra:106763205 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0175 6 1283364 1287403 Vra6g0175 6 1283364 1287403 ECH