Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0141 ATGGAGGGAAAGAGGAGGAGGTTACAAATGGAGTCACAAGCAGAGAGTGTGATTCTTCTCACGAAAATCAAAGAATTCACTCGAGTTTTGCTCACAGATCTCACCAATGGACGCTCACCACTCATTCTCATCGATCGCTTCAGAAGCTACTGTGCCGTTCCCAACGCCAACTGGTTCCGTTCTAACTCCAACCAATCACCTTTTCACCTTTTCGTTTCTGACATTTTTTTGCAATGCAGCTTTTGTGCCTCCGATTTGCCGTACGGAAAGGAAGCTCTCACACTCAGCACGAAATCCCGCGCGCACAGACTAGTTGTCATGTTGAGGGTGATGCTGATTGTTCAGAAACTTTTGCAAGAGAACAAGCATAGCTCCAAGAGAGACATTTATTACACGTATCCTTCTTTATTTTTGGATCAGTCAATGGTGGACCAAGCAATTAATGATATATGTATTTTTATGCAGTGCAGTCGCCATAACCTTAATGTGGTTTCCGCAGGGAATGGGTTAACTATGGGCTGGATAAGGTTCTCTGAAGGAGAGAGGAAATTTGACTGCATTAGTTCTCCCAACAGTGTCCATCCCGTTCCCGTTCATGTTGAGGAAGTTAAAGATATCATTAGTGTTGCACAATACATATTAGTTGTGGAGAAAGAATCAGTTTTCCAAAGACTGGCAAACGACCAATTCTGCAATGCAAATCACTGTATTGTCATCACTGTAAGCAATCTTCTGAAGACATTAGTTTCTTTTGGAACAATATTTCTTTGTTTGAATTTTATCTTTATACAGGGAAGAGGCTACCCAGATATTCCTACAAGGAGGTTTTTGCGGCTTCTGGTAGAGAAATTGCGACTGCCTGTTTATTGCTTGGTAGATTGTGATCCCTATGGCTTTGACATTCTAACCACTTACAGATTTGGTTCGATGCAAATGGCTTACGACACGAAACATCTTCGTGTCCCAGAGATACGCTGGCTTGGAGCTTTTCCTTCAGATTCCGAGAGATATTTTGTTCCAAAGCAGTGTATCCTTCCTTTGACTGCTGAGGACAAAAGAAAAGTTGAAGCCATGTTACTTAGATGCTACCTTCAAAGGGAGGTACCACAATGGAGGTTGGAGCTAAAGCTGATGCTCCAAAAGGGAGTAAAGTTTGAGATAGAAGCCTTATCTGCGCACGCACTTTCATACTTGTCAGATTCTTACATCCCATCTAAAATTGAACGTAAATTGATTATGTAG 1242 0.4195 MEGKRRRLQMESQAESVILLTKIKEFTRVLLTDLTNGRSPLILIDRFRSYCAVPNANWFRSNSNQSPFHLFVSDIFLQCSFCASDLPYGKEALTLSTKSRAHRLVVMLRVMLIVQKLLQENKHSSKRDIYYTYPSLFLDQSMVDQAINDICIFMQCSRHNLNVVSAGNGLTMGWIRFSEGERKFDCISSPNSVHPVPVHVEEVKDIISVAQYILVVEKESVFQRLANDQFCNANHCIVITVSNLLKTLVSFGTIFLCLNFIFIQGRGYPDIPTRRFLRLLVEKLRLPVYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLRVPEIRWLGAFPSDSERYFVPKQCILPLTAEDKRKVEAMLLRCYLQREVPQWRLELKLMLQKGVKFEIEALSAHALSYLSDSYIPSKIERKLIM* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0141 413 Gene3D - 82 166 IPR036388 -
Vra6g0141 413 SUPERFAMILY DNA topoisomerase IV, alpha subunit 101 241 IPR036078 GO:0003677|GO:0005694
Vra6g0141 413 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 11 240 - -
Vra6g0141 413 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 260 409 - -
Vra6g0141 413 CDD TOPRIM_TopoIIB_SPO 212 397 IPR034136 -
Vra6g0141 413 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 11 240 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vra6g0141 413 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 260 409 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vra6g0141 413 SUPERFAMILY DNA topoisomerase IV, alpha subunit 253 409 IPR036078 GO:0003677|GO:0005694
Vra6g0141 413 Gene3D - 168 412 - -
Vra6g0141 413 PRINTS DNA topoisomerase VI subunit A family signature 126 137 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vra6g0141 413 PRINTS DNA topoisomerase VI subunit A family signature 140 157 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vra6g0141 413 PRINTS DNA topoisomerase VI subunit A family signature 158 173 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vra6g0141 413 PRINTS DNA topoisomerase VI subunit A family signature 293 309 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vra6g0141 413 Pfam Type IIB DNA topoisomerase 103 163 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0141 Vra-Chr6 1001970 1005513 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0141 K10878 - gmx:100813920 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0141 6 1001970 1005513 Vra6g0141 6 1001970 1005513 ECH