Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0139 ATGGGTTGGGAATGGCGGTTGTGGAGCAGAGAAAGAGGGTGGAAAGGAAAAATGGCGCCGGTGGCAGCGAGAAGCGCGGGCGCCGTGGGTGTTGGTGTTGCAATCTTCATCTCAGTCGCTCTTACAACCTATTTAATCTGTGACCGCCGCTCAAAGAAGAAGAGCATATCAATGAAGAATGGGGTCGTGGAGGCCATCGGTAACACCCCTCTCATTCGGATCAACAGCCTCTCCGCCGCCACTGGTTGTCAAATTCTTGGCAAGTGCGAGTTCTTGAATCCCGGAGGCAGTGTCAAGGACCGTGTTGCTCTTCAAATAATTCAAGAGGCTCTGGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGAAGTACTGCCATTAGCATTGCTACTGTTGCTCCTGCCTATGGGTGCAAGACCCACGTGGTTATACCAGATGATGCTGCCATTGAGAAGTCTCAAATACTTGAAGCCCTTGGGGCAACTGTTGAAAGAGTGCGACCAGTGTCCATTACTCACAAAGACCATTTTGTAAATATCGCAAGAAGACGGGCATCTGAAGCAAATGAGTTTGCGCTGAAACAGAGAAATTTACATCTGAATGACAAGGACACTGCGAAAATAAATGGTTATGAATCTGATGGATACCATTATAGTTCTCTGTTTCCTAGTGACTGCCAAGGTGGGTTTTTTGCAGATCAGTTTGAAAACATAGCGAACTTCAGGGCCCATTACCAGGGTACAGGGCCTGAGATTTGGGAACAGACCAATGGAAAGTTAGACGCATTTGTTGCAGCAGCAGGCACTGGTGGCACTGTGGCTGGTGTTTCTACGTTTCTTCAGGAAAAGAATCCAGAAATCAAATGCTTCCTCGTAGATCCTCCAGGTTCTGGTCTGTATAATAAGGTAACTCGGGGAGTGATGTACACCAAAGAGGAGGCTGAAGGAAAAAGACTTAAGAATCCATTTGACACTATAACAGAAGGAATTGGAATTAACAGGATAACAAAGAATTTTGCGATGGCAAAACTTAATGGCGCCTTTAGAGGCACCGACAGGGAGGCTGTTGAAATGGCTAGGTTTCTTTTGAAGAACGATGGGCTTTTCCTCGGGAGTTCATCTGCAATGAACTGTGTCGGAGCAGTTAGAGTAGCACAGGCAATTGGCCCTGGCCATACCATTGTGACCATACTCTGCGATAGTGGAATGAGACATTTGAGCAAGTTCTATAATGTTGGATACTTGTCTGAGCTGGGTTTGACACCGAAAGCAGCTGGATTGGAGTTCTTGGGGATCGAATGA 1317 0.4715 MGWEWRLWSRERGWKGKMAPVAARSAGAVGVGVAIFISVALTTYLICDRRSKKKSISMKNGVVEAIGNTPLIRINSLSAATGCQILGKCEFLNPGGSVKDRVALQIIQEALESGQLRPGGIVTEGSAGSTAISIATVAPAYGCKTHVVIPDDAAIEKSQILEALGATVERVRPVSITHKDHFVNIARRRASEANEFALKQRNLHLNDKDTAKINGYESDGYHYSSLFPSDCQGGFFADQFENIANFRAHYQGTGPEIWEQTNGKLDAFVAAAGTGGTVAGVSTFLQEKNPEIKCFLVDPPGSGLYNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRITKNFAMAKLNGAFRGTDREAVEMARFLLKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTIVTILCDSGMRHLSKFYNVGYLSELGLTPKAAGLEFLGIE* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0139 438 PANTHER CYSTATHIONINE BETA-SYNTHASE 49 436 - -
Vra6g0139 438 Gene3D - 93 200 IPR036052 -
Vra6g0139 438 PANTHER CYSTEINE SYNTHASE-RELATED 49 436 - -
Vra6g0139 438 Pfam Pyridoxal-phosphate dependent enzyme 65 405 IPR001926 -
Vra6g0139 438 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 54 417 IPR036052 -
Vra6g0139 438 CDD CBS_like 67 412 - -
Vra6g0139 438 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 88 106 IPR001216 GO:0006535
Vra6g0139 438 Gene3D - 225 418 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0139 Vra-Chr6 995464 998148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0139 57 412 Miscellaneous Gene Families AT3G04940 29.888 1.73e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0139 K01738 - gmx:100799081 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0139 6 995464 998148 Vra6g0139 6 995464 998148 ECH