Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0131 ATGGCGCAGGTGCTGTACATGGCTTTACCTGTCCCCGCAAAACCTCGCAAAGCTGCATCATCATCTTCTTCTTCCAAGCCATTGAAGTTTTCCCGTAGAAGCTGCTGCACTAACATATCCATTCCTACTGTCAAAGGCAGAGGCAAACGTTTGGTCAAACCCCAGAAGCTGAATTTAGAGGTTTCTCCTCATAGAGCTGTTTCAGCGGTGAGATTGATGCGAATTGAGCTCGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGATATGTTCAAAGAACGCTCGGTTTTCGCACTCGGGAATTGAGTCATCATGACCTTAGATTGGTCACAGACATTGTTGGTGGCACAATTCGCTGGAGAAGATATCTTGATCATCTGATCAATTCACTATGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGGTTGTCAAATTGGACATGCCACCTTATGCTGTTGTAGATGAGAACGTGGAGCTTGCTAAAGTTGCTCTTAGACCTGGGGCTGGAAACATGGTCAATGGAATCCTCCGAAAGCTAGTTGTGCTTAAGGAGAACGGTACTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCTCAAGCCCGTGCATTGGCAACTCTACACTCACATCCAGTTTGGATGATAAGGAGATGGACAAAGTATCTCGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAGCCCAGTTTCAGCTTAAGAGCAAATCGTGCAAGTGGTTTTTCAAGAGATGACCTTGTGGCACAGCTTAATGCATTGAAGGTCCCACACAAGCTTTCATTGTATTTAGATGAATTTGTTCGTATCAAAACTGGGTTGCAGATTGTCATTCATGCTGGTCTGCTCAAAAAGGGTTTATGTTCAGTTCAGGATGAAAGTGCAGGTCTAGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACTATCGTCGATGGTTGTGCTGCTCCTGGTGGGAAGACCCTATACATGGCCTCTCATTTAAGTGGTCAAGGTAAGGTATTTGCAGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTCATTACCGCCATTCATGCTGATCTTCGTACATTGACTGATAATGAACAACTTAAGAGTGACAAAGTTTTGTTGGATGCTCCATGTTCTGGACTTGGTGTTCTATCCAAGAGAGCGGACTTGCGATGGAACAGGAAGCTTGAGGATATGGAAGAACTGAAGAAATTACAAGATGAGCTCCTGGATGCAGCATCCAAATTGGTAAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCCGAAGAGAACGATGACAGGGTGGCTGAATTTCTTGTAAGACATCCGGATTTCTGCATTGATCCTGTACACGGATATGTTCCTCCTGATTTTGTGACAAGCAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCACTAGATGGTTCCTTTGCTGCCCGTTTGGTACGTGATTCATAG 1590 0.4421 MAQVLYMALPVPAKPRKAASSSSSSKPLKFSRRSCCTNISIPTVKGRGKRLVKPQKLNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMIRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNALKVPHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVVSVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTLTDNEQLKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKKLQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVAEFLVRHPDFCIDPVHGYVPPDFVTSSGFFFSNPVKHSLDGSFAARLVRDS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0131 529 Pfam 16S rRNA methyltransferase RsmB/F 331 525 IPR001678 GO:0008168
Vra6g0131 529 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 43 528 IPR023267 GO:0001510
Vra6g0131 529 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 106 527 IPR004573 GO:0006364|GO:0008649
Vra6g0131 529 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 43 528 - -
Vra6g0131 529 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 224 527 IPR029063 -
Vra6g0131 529 PRINTS RNA (C5-cytosine) methyltransferase signature 312 326 IPR023267 GO:0001510
Vra6g0131 529 PRINTS RNA (C5-cytosine) methyltransferase signature 341 351 IPR023267 GO:0001510
Vra6g0131 529 PRINTS RNA (C5-cytosine) methyltransferase signature 409 421 IPR023267 GO:0001510
Vra6g0131 529 PRINTS RNA (C5-cytosine) methyltransferase signature 459 475 IPR023267 GO:0001510
Vra6g0131 529 PRINTS RNA (C5-cytosine) methyltransferase signature 510 527 IPR023267 GO:0001510
Vra6g0131 529 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 252 528 IPR001678 GO:0008168
Vra6g0131 529 SUPERFAMILY NusB-like 101 236 IPR035926 -
Vra6g0131 529 PRINTS Viridiplantae FMU-related RCMT signature 70 93 IPR023268 -
Vra6g0131 529 PRINTS Viridiplantae FMU-related RCMT signature 94 110 IPR023268 -
Vra6g0131 529 PRINTS Viridiplantae FMU-related RCMT signature 209 222 IPR023268 -
Vra6g0131 529 PRINTS Viridiplantae FMU-related RCMT signature 486 498 IPR023268 -
Vra6g0131 529 Pfam NusB family 96 202 IPR006027 GO:0003723|GO:0006355
Vra6g0131 529 CDD AdoMet_MTases 339 465 - -
Vra6g0131 529 Gene3D Vaccinia Virus protein VP39 326 529 IPR029063 -
Vra6g0131 529 Gene3D Sun protein; domain 3 220 325 - -
Vra6g0131 529 Gene3D - 81 211 IPR035926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0131 Vra-Chr6 946871 955775 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0131 K03500 - gmx:100779327 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0131 6 946871 955775 Vra6g0131 6 946871 955775 ECH