Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0105 ATGACTGTGGGGGCAGGGATATCTGTTGCAGATGGAAACTTGATGGTGTTGGGGAAGAAGGTGCTGAGCCATGTCCATGAAAACGTTGTTGTTAACCCTGCATGTGGGGGTGCGTTGCTCAGTGGAGCATTCATTGGGGTTGAATCCCATCAAAAGGGTAGTCGCACAGTCTTCCCAATCGGCAAGCTTGAGGGGTTGCGGTTTATGTGTGTTTTCCGGTTCAAGATGTGGTGGATGACGCAGAGAATGGGCACTTGCGGACAAGAAGTTCCCTTTGAGACGCAGTTCTTGCTTGTTGAAGCACAAAGTGGCTCTGATATTGATGCAGGAGAAGACCAATCTGCTGCTACCTATGCAGTTTTCTTACCCCTTCTGGAAGGAGATTTCAGAGCAGTTCTTCAGGGGAATGATCAAAACGAGATTGAGATCTGTGTGGAAAGTGGTTGTCCCGCTGTGGAGGACTTCGATGGGACTCATTTGGTTTATATCGGAGCTGGATCCGACCCTTACGAAGTCATTACAACTTCTGTCAAAGCTGTGGAGAAACACTTACAGACCTTTGCTCATCGCGAGCGAAAGAAGATGCCAGATATGTTGAACTGGTTTGGATGGTGTACATGGGATGCTTTCTACACTAATGTCACTTCAGAGAATGTGAAGCAAGGATTACAAAGCTTCGAGAAAGGTGGAATTCCTGCCAAGTTTGTTATAATCGATGATGGCTGGCAATCTGTTGACATGGACCCCAATGGTACTGAATGGAAATCTGATCATGCAGCCAATTTTGCAAATCGCTTAACCAACATCAAAGAGAATCACAAATTCCAGAAGGATGGCAAAGAAGGTGAAAGAGTAGAGGACCCAGCTCTGGGACTTCGTCATATTACCAATGAAATCAAACAAGAGCATTATATAAAGTACGTATATGTGTGGCACGCAATAACAGGATATTGGGGTGGTGTTAAGCCTGGGGTTACCGGCATGGAGCACTACGACTCAAAGATGGCCTTCCCTGTCTCATCTCCTGGAGTTGAGTCAAATCAACCAGATGAAGTTTTGGCAACCATTGCCATCAATGGGCTTGGTCTTGTGAATCCCGAGAAAGTTTTTCACTTTTATGATGAACTTCACTCATATTTGGCATCTGCCGGTGTTGATGGTGTCAAGGTTGATGTTCAGAATATCCTTGAAACTCTTGGAGCAGGACATGGTGGGAGAGTGAAACTTGCAAGAAAATACCACCAAGCATTAGAGGCATCAATTTCCAAGAACTTCCCTGATAATGGAATCATCTGTTGCATGAGTCACAACACTGATGGACTATACAGCGCAAAGCGTTCAGCTGTTATCAGGGCATCAGATGATTTTTGGCCAAGAGACCCTGCTTCCCACACGATTCACATTGCATCGGTGGCTTACAATACTATTTTCCTTGGTGAATTTATGCAGCCAGACTGGGATATGTTTCATAGCCTGCATCCAATGGCTGAATACCATGCAGCAGCACGAGCTGTAGGAGGATGTCCAATTTATGTCAGTGACAAGCCAGGACACCATGACTTTGATCTTTTGAAGAAACTTGTACTACCTGATGGTTCTATTCTAAGAGCTAAACTTCCAGGAAGACCAACAAAGGATTGTTTATTTACTGATCCAGCCAGAGATAGAAAGAGTCTTCTCAAGATTTGGAACATTAATGATTTATCTGGAGTTGTTGCGGTGTTCAATTGCCAAGGAGCTGGGTGGTGCAAAGTTGACAAGAAGAACCTTATCCACGATGACAATCCAGACACTGTCACAGGTTTCATTAGAGCTAAAGATGTTGACTATTTATCTAGGATAGCAGATGATAAATGGACAGGAGATGCTGTTATATATTCCCATCTGGGTGGAGAGGTGGTTTACCTTCCGAAGGATGCAACCCTCCCAGTGACCTTGAAATCCAAAGAATATGAAATTTTCACAATAGTTCCCGTCAAGGAATTGAGCAATGACATCAAATTTGCTCCTATTGGTTTAATAAAGATGTTCAATTCAGGAGGGGCCGTCAAAGAATTCTTCAATTGGAGATCTAATGAAAGTACAAATGTAACCATGAAAGTTCGTGGTTGTGGCCAATTTGGTGCTTATTCATCAGCTCAGCCAAAGTCAATAAGTGTCGATTCAGAAGAGGTAGAATTCCGGTATGAGGAAGAAACTGGATTGGTGACTGTTGAATTGAGAGTACCCGAGAAAGAGTTATACCAATGGAGTATTTCCATTGATTTTTGA 2271 0.4364 MTVGAGISVADGNLMVLGKKVLSHVHENVVVNPACGGALLSGAFIGVESHQKGSRTVFPIGKLEGLRFMCVFRFKMWWMTQRMGTCGQEVPFETQFLLVEAQSGSDIDAGEDQSAATYAVFLPLLEGDFRAVLQGNDQNEIEICVESGCPAVEDFDGTHLVYIGAGSDPYEVITTSVKAVEKHLQTFAHRERKKMPDMLNWFGWCTWDAFYTNVTSENVKQGLQSFEKGGIPAKFVIIDDGWQSVDMDPNGTEWKSDHAANFANRLTNIKENHKFQKDGKEGERVEDPALGLRHITNEIKQEHYIKYVYVWHAITGYWGGVKPGVTGMEHYDSKMAFPVSSPGVESNQPDEVLATIAINGLGLVNPEKVFHFYDELHSYLASAGVDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASISKNFPDNGIICCMSHNTDGLYSAKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCPIYVSDKPGHHDFDLLKKLVLPDGSILRAKLPGRPTKDCLFTDPARDRKSLLKIWNINDLSGVVAVFNCQGAGWCKVDKKNLIHDDNPDTVTGFIRAKDVDYLSRIADDKWTGDAVIYSHLGGEVVYLPKDATLPVTLKSKEYEIFTIVPVKELSNDIKFAPIGLIKMFNSGGAVKEFFNWRSNESTNVTMKVRGCGQFGAYSSAQPKSISVDSEEVEFRYEEETGLVTVELRVPEKELYQWSISIDF* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0105 756 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 1-RELATED 1 755 - -
Vra6g0105 756 Gene3D Aldolase class I 197 527 IPR013785 -
Vra6g0105 756 SUPERFAMILY (Trans)glycosidases 196 527 IPR017853 -
Vra6g0105 756 Pfam Raffinose synthase or seed imbibition protein Sip1 7 739 IPR008811 -
Vra6g0105 756 PANTHER - 1 755 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0105 Vra-Chr6 749586 753886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0105 1 754 Glycoside Hydrolase AT1G55740 72.053 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0105 K06617 - gmx:100785506 1446.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0105 6 749586 753886 Vra6g0105 6 749586 753886 ECH