Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0043 ATGAAGAACCTTCTCTTACTTTTTCCCTTTCTCTTTCTCCTCCTCTCCTCCGCCGTCAATGGCGCTCACAACATCACGCACATCCTCGAGAAACATCCGGGCTTCTCCACCTTCAACCACTACCTCACCGTCACCCACCTCGCCGACGAGATAAACCGCCGCCAGACCATCACCGTGCTCGCCATCGACAATGGTGCCATGAACTCCCTCCTCGACAAGCACCTCACCCTCCCCACCCTCAAAAACGTCCTCTCCCTCCATGTACTCGTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCAACAACAGCACCACTCTCGTCTCCTCCATGTTCCAGGCCACCGGAGCAGCAGCCGGAACCTCCGGCTACGTCAACATCACCAACCTCAAGGGCGGCAAGGTGGGCTTCGCCGCCGAGGACAACGACGGCTCCCTCCACTCCTTCTTCGTCAAGTCCCTCCAAGAATTCCCCTACTACATCTCCGTCCTCCAAATCAGCAACCCCATAAGCTCCGCCGACGCCGAAGCCCCCACCGCCGCACCCTCCGCCATCGACCTCATATCAATTATGTCCAAACAAGGCTGCAAGTCCTTCGCCGACCTTCTCAGAGGCTCCAAAGCGCTTCCGGCTTTCAAAGAAAGCATCGACGGCGGCTTGACGGTTTTCTGCCCCACCGACAGCGCCGTCAACGGGTTCGCCCCCAAGTACAAGAACCTCACCGACTCTCAAAAAGTTTCACTCTTGTTGTACCACGGCGTTCCCCTTTACGAGTCCCTGCAGATGCTGAAGTCCAGCAACGGCCTCATGAACACTCTCGCCACCGAGGGAGCCAACAAGTACGATTTCACCGTCCAGACTGACGGCGAAGACGTGAGTCTGAAGACGAAGATAAACACTGTCAGCATAATCGGCACGCTCATAGATCAAGATCCCTTCGTGGCGTACAAGATCAACAAGGTCTTGATGCCCAGAGAGTTGTTCAAGGCCTCCGACGTCGACGACGACGAAGCACCCGCCGAGTCACCAAAGCCATTGAACAGGAAGAAGGGCAAGAAGGGAGTGCAAGATTCCGCCGCCGATGCTCCCGCCGACGGACCCTCGTCGGATTCCGAAGATCAGAAAGCCGCCGACGAAGACAGCAACAATGTAAGTGGATTGCACGACGGCGTAAGATTGGTGTCGGCGGCGTTGTTCAGTGTGTTGATTGGATTTTTGGTTCTATGA 1227 0.5623 MKNLLLLFPFLFLLLSSAVNGAHNITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNSLLDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGSLHSFFVKSLQEFPYYISVLQISNPISSADAEAPTAAPSAIDLISIMSKQGCKSFADLLRGSKALPAFKESIDGGLTVFCPTDSAVNGFAPKYKNLTDSQKVSLLLYHGVPLYESLQMLKSSNGLMNTLATEGANKYDFTVQTDGEDVSLKTKINTVSIIGTLIDQDPFVAYKINKVLMPRELFKASDVDDDEAPAESPKPLNRKKGKKGVQDSAADAPADGPSSDSEDQKAADEDSNNVSGLHDGVRLVSAALFSVLIGFLVL* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0043 408 Pfam Fasciclin domain 34 107 IPR000782 -
Vra6g0043 408 Pfam Fasciclin domain 196 324 IPR000782 -
Vra6g0043 408 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 3 395 - -
Vra6g0043 408 MobiDBLite consensus disorder prediction 332 356 - -
Vra6g0043 408 SUPERFAMILY FAS1 domain 181 325 IPR036378 -
Vra6g0043 408 SMART fasc_3 221 325 IPR000782 -
Vra6g0043 408 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 395 IPR033254 -
Vra6g0043 408 MobiDBLite consensus disorder prediction 332 386 - -
Vra6g0043 408 ProSiteProfiles FAS1/BIgH3 domain profile. 22 189 IPR000782 -
Vra6g0043 408 SUPERFAMILY FAS1 domain 28 141 IPR036378 -
Vra6g0043 408 ProSiteProfiles FAS1/BIgH3 domain profile. 183 322 IPR000782 -
Vra6g0043 408 Gene3D FAS1 domain 22 148 IPR036378 -
Vra6g0043 408 Gene3D FAS1 domain 187 324 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0043 Vra-Chr6 304800 306429 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0043 - - gmx:100805178 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0043 6 304800 306429 Vra6g0043 6 304800 306429 ECH