Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0040 ATGATTCTCTGCTACAGGCGATTGTTACACAATGCAAGTCATGCTATTTCTACCCAGTTAGCTTTTTCAGAGCAATTGCTACATCACTGCAACTCATCTCATCACCACCATCTCCAATTTCCAACTTTGAATTTGGAATATCATCGATACAAAGATTCTTGTAGCGTGGAAGATGCCCATCAGCTTCATCTACACATCTACAAATCTGGGCTTACCAATGATGTTTTCTGGTGTAATACTCTTATCAACATATATGTCAGAGTCGGGGGCTTGGTTTCCGCGCAGAAGTTGTTTGATGAAATGCCGCAGAAGAACCTCGTTTCGTGGTCTTGTTTAATTTCTGGGTATGCGCAAAATGGCATGCCTGAGGAGGCATGCGTTTTATTCAAAGGGGTCATTTCGGCTGGTCTCTTGCCAAACCACTATGCCATTGGTAGTGCTCTGCGAGCATGCCAAGAGATTGGTCCAAATAAGCTTAAACTCGGGATGGAGATTCATGGCTTAATTTCCAAGTCTCCTTATGCTTCCGACATGGTGTTGTCTAATGTGCTAATGTCCATGTATTCACATTGCTCGGCCTCCATTGATGATGCTCGTCGTGTTTTTGATGAAATAAAAATTAAAACTTCTTCATCCTGGAATTCTATAATTTCGGTTTATTGTTGTAGGGGAGATGCAATTTCTGCTTTTAAGTTCTTTTCAAGCATGCAAAGGGAAGCTACAGAATTTACCTGCAGGCCAAATGAATATACCTTCTGTAGCTTAGTAACTGCTGCATGCTCTCTGGTTGACTGTGGACTGGCTTTGCTAAAGCAGATGCTGGCGAGGATTGAAAAGTCTAGCTTCGTTCAAGATTTATATGTTGGTAGTGCATTGGTCAGTGGGTTTGCAAAGCACGGTTTAATAGATTCTGCTAAAATGATTTTTGAACGGATGTGTGATCGTAATGCAGTGACTATGAACGGGTTAATGGTCGGACTTGCGAAGCAGCATCATGGCGAAGAAGCAGCTAAGATATTCAAGGAAATGAACAATTTGGTTGAAATAAATGCATCATCTTATGCAGTTCTTTTAAGTTCTTTTAGTGAATTTTCAGATTTAAAGGAAGGGAAGAGAAAGGGTCAAGAGGTTCATGCTTATCTGATTAGAAATGCCTTGGTTGATGTTTGGATTTTGATTGGAAATGCACTTGTCAATATGTATGCAAAGTGCAACGCCATTGATAATGCTCGTTCAGTTTTTCAATTCATGCCCAGTAAAGATTCTGTCTCATGGAACTCTATGATCTCTGCCCTTGACCACAATGAGCGATTTGATGAAGCAGTTGCCTGTTTCCATAAAATGAGAAGAAATGGAATGGTGCCATCAAAGTTCTCAGTCATTAGTGCTTTGAGTTCGTGTGCAAGTTTGGGTTGGATCATGTTAGGACGACAAATACACGGTGAAGGGACCAAATATGGGCTTGATTTGGATGTTTCAGTTTCGAATGCTCTTCTAACGTTGTATGCTGAAACTGATTATATGGACGAGTGTAAGAAAGTCTTCTTTCTAATGCCAGAGTATGATCAAGTTTCTTGGAATTCTTTTATTGGTGCACTAGCAACATCAGACGTGTCAGTCTTACAGGCAATAAAATATTTCCTGGAGATGATGCAAGGTGGATGGAAACTCAACAGAGTAACATTTATAAATATTTTAACGGCAGTATCTTCTCTCTCTCTTCTTGAACTGGGCCGTCAAATTCATGCTTTATTCTTAAAATACTCTATTGCTGACGATAATGCTATTGAGAATACCCTTCTAGCTTTTTATGGGAAGTGTGAGCACATTGAGGACTGTGAGATTATCTTTTCTAGAATGTCGGAGCGAAGGGATGAAGTGAGTTGGAATTCAATGATTTCTGGATATATTCACAATGGCATCCTGCATAAAGCCATGGATATGGTATGGTTTATGATGCAAAGGGGCCAAAGATTGGATGGTTTCACGCTTGCCACTGTTCTTAGTGCCTGTGCTTCGGTTGCAACATTAGAGCGTGGTATGGAAGTTCATGCATGTGCAATAAGGGCTTGTTTAGAATCTGAAGTTGTTGTTGGCAGTGCACTGGTTGACATGTATGCGAAATGTGGAAGGATAGATTATGCAACGAGATTCTTTCAATCGATGCCTGTGAGGAACATATATTCTTGGAATTCTATGATTTGTGGTTATGCACGCCATGGACATGGAGAGAAAGCTCTAAAGCTTTTCACACAAATGAAACAGCACGGCCAGTTGCCAGATCATGTCAGTTTTGTTGGTGTCCTATCTGCCTGTAGTCATGTAGGGTTAGTTGATGAAGGATTTAAGCATCTCAAATCAATGAGTGGAGTGTATGGACTAGCACCTCGAATGGAGCACTTCTCTTGTATGGTAGACCTCCTTGGGAGGGCAGGTGATGTTAATAAGATAGAGGAATTCATCAAAACAATGCCAATGGATCCTAATGCCCTTATCTGGAGAACAATTTTGGTAGCATGCTGTCGAGCAAATAGCCGTAATACAGAGCTAGGTCGGAGGGCTGCCAAGATGCTTATTCAGTTAGAGCCACAGAATGCTGTGAACTATGTGCTTGTTTCTAACATGCATGCCGCTAGTGGGAAGTGGGAAGATGTGGCAGAGGCTAGGTTAGCAATGAGGAATGCATCAGCAAAGAAGGAAGCTGGGTGTAGTTGGGTCACCATGAAGGATGGAGTTCATGTGTTTGTAGCTGGAGACCAAACACACCCAGAAAAAGAAAAGATCTATGAAAAACTCAAGGAGATAATGAACAAAATGAGGGGCATGGGATATGTGCCTGAAACCAAATATGCATTATATGATCTTGAGCTTGAAAACAAAGAAGAGCTTATCAGCTATCATAGTGAGAAACTAGCGATTGCTTTTGTTCTCACTCGCCAATCTGAGCTACCAATTAGGATAATGAAGAACCTTCGGGTTTGTGGTGACTGTCACACTGCTTTCAAATTCATATCAAAGATTGTTAATCGACAGATAATTTTACGAGATTCAAATAGATTTCACCATTTTGATGATGGCATATGTTCTTGTGGGGATTATTGGTGA 3105 0.4087 MILCYRRLLHNASHAISTQLAFSEQLLHHCNSSHHHHLQFPTLNLEYHRYKDSCSVEDAHQLHLHIYKSGLTNDVFWCNTLINIYVRVGGLVSAQKLFDEMPQKNLVSWSCLISGYAQNGMPEEACVLFKGVISAGLLPNHYAIGSALRACQEIGPNKLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFDEIKIKTSSSWNSIISVYCCRGDAISAFKFFSSMQREATEFTCRPNEYTFCSLVTAACSLVDCGLALLKQMLARIEKSSFVQDLYVGSALVSGFAKHGLIDSAKMIFERMCDRNAVTMNGLMVGLAKQHHGEEAAKIFKEMNNLVEINASSYAVLLSSFSEFSDLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNMYAKCNAIDNARSVFQFMPSKDSVSWNSMISALDHNERFDEAVACFHKMRRNGMVPSKFSVISALSSCASLGWIMLGRQIHGEGTKYGLDLDVSVSNALLTLYAETDYMDECKKVFFLMPEYDQVSWNSFIGALATSDVSVLQAIKYFLEMMQGGWKLNRVTFINILTAVSSLSLLELGRQIHALFLKYSIADDNAIENTLLAFYGKCEHIEDCEIIFSRMSERRDEVSWNSMISGYIHNGILHKAMDMVWFMMQRGQRLDGFTLATVLSACASVATLERGMEVHACAIRACLESEVVVGSALVDMYAKCGRIDYATRFFQSMPVRNIYSWNSMICGYARHGHGEKALKLFTQMKQHGQLPDHVSFVGVLSACSHVGLVDEGFKHLKSMSGVYGLAPRMEHFSCMVDLLGRAGDVNKIEEFIKTMPMDPNALIWRTILVACCRANSRNTELGRRAAKMLIQLEPQNAVNYVLVSNMHAASGKWEDVAEARLAMRNASAKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYEKLKEIMNKMRGMGYVPETKYALYDLELENKEELISYHSEKLAIAFVLTRQSELPIRIMKNLRVCGDCHTAFKFISKIVNRQIILRDSNRFHHFDDGICSCGDYW* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0040 1034 Pfam E motif 847 906 IPR046848 -
Vra6g0040 1034 Pfam E+ motif 912 939 IPR046849 -
Vra6g0040 1034 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 625 659 IPR002885 -
Vra6g0040 1034 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Vra6g0040 1034 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Vra6g0040 1034 PANTHER OS01G0913400 PROTEIN-RELATED 59 154 - -
Vra6g0040 1034 PANTHER OS01G0913400 PROTEIN-RELATED 135 239 - -
Vra6g0040 1034 PANTHER OS01G0913400 PROTEIN-RELATED 491 590 - -
Vra6g0040 1034 PANTHER OS01G0913400 PROTEIN-RELATED 592 977 - -
Vra6g0040 1034 PANTHER OS01G0913400 PROTEIN-RELATED 244 493 - -
Vra6g0040 1034 TIGRFAM PPR: pentatricopeptide repeat domain 728 761 IPR002885 -
Vra6g0040 1034 TIGRFAM PPR: pentatricopeptide repeat domain 212 239 IPR002885 -
Vra6g0040 1034 TIGRFAM PPR: pentatricopeptide repeat domain 423 456 IPR002885 -
Vra6g0040 1034 TIGRFAM PPR: pentatricopeptide repeat domain 107 140 IPR002885 -
Vra6g0040 1034 Gene3D Tetratricopeptide repeat domain 744 938 IPR011990 GO:0005515
Vra6g0040 1034 Pfam DYW family of nucleic acid deaminases 943 1034 IPR032867 GO:0008270
Vra6g0040 1034 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 726 760 IPR002885 -
Vra6g0040 1034 Pfam PPR repeat family 420 468 IPR002885 -
Vra6g0040 1034 Pfam PPR repeat family 726 773 IPR002885 -
Vra6g0040 1034 Pfam PPR repeat family 210 261 IPR002885 -
Vra6g0040 1034 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Vra6g0040 1034 Gene3D Tetratricopeptide repeat domain 384 472 IPR011990 GO:0005515
Vra6g0040 1034 Gene3D Tetratricopeptide repeat domain 158 262 IPR011990 GO:0005515
Vra6g0040 1034 Gene3D Tetratricopeptide repeat domain 263 383 IPR011990 GO:0005515
Vra6g0040 1034 Gene3D Tetratricopeptide repeat domain 10 157 IPR011990 GO:0005515
Vra6g0040 1034 Gene3D Tetratricopeptide repeat domain 575 685 IPR011990 GO:0005515
Vra6g0040 1034 Gene3D Tetratricopeptide repeat domain 473 574 IPR011990 GO:0005515
Vra6g0040 1034 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Vra6g0040 1034 Pfam PPR repeat 318 343 IPR002885 -
Vra6g0040 1034 Pfam PPR repeat 290 315 IPR002885 -
Vra6g0040 1034 Pfam PPR repeat 627 656 IPR002885 -
Vra6g0040 1034 Pfam PPR repeat 496 520 IPR002885 -
Vra6g0040 1034 Pfam PPR repeat 107 136 IPR002885 -
Vra6g0040 1034 Pfam PPR repeat 78 105 IPR002885 -
Vra6g0040 1034 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 59 154 - -
Vra6g0040 1034 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 592 977 - -
Vra6g0040 1034 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 135 239 - -
Vra6g0040 1034 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 244 493 - -
Vra6g0040 1034 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 491 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0040 Vra-Chr6 289721 293121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0040 62 761 Glycoside Hydrolase AT3G49170 25.102 1.05e-52 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0040 - - gmx:100800858 1863.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0040 6 289721 293121 Vra6g0040 6 289721 293121 ECH