Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2865 ATGGATAGCATAGAGCAGATGAAAGAGGAGATAGAGAAGATTGAAGAAAGTCCCAGTTCAGATAGCACAGCAACACCTCTATTAAGGGTAACTAATGATGGAGAAGAAAACACAAGATGGTGGAATGGAGTGTTGGACATGGAAGAGGCCAAACATCAACTATTGTTTTCTCTTCCAATGATTCTTACTAACATATTCTATTATTTGATCACTTCGGTTTCTGTCATGCTAGTAGGTCACCTTGGAGAGCTTCAGCTTGCTGGTGCTACTCTTGCAAACTCATGGTTCAATGTCACTGGCTCTGCCATCATGGTTGGTTTGAGTGGGGCATTGGAAACACTGTGTGGACAAGGATTTGGAGCAAAGGAATACCAAGTGTTGGGAATTTACCTACAAGCCTCTTGCATCATATCTCTAATTTTTTCCATCATGGTATCCATTATTTGGTTCTATACAGAACCTGTCCTAGTGTTTCTTCATCAATCTCAGGACATTGCAAGAACAACTGCTCTCTATATGAAGTTTTTGATCCCTGGATTATTTGCATACAGCTTCTTGCAAAATATTCTGAGGTTTCTCCAGACACAATCTGTGGTAATGCCATTGGTTGTACTTTCAGCTCTTCCATTGTTGGTTCATATTGGTATTGCATATGCCTTGGTTCAGTGGTCAGGTCTGAGCTTTATAGGTTCACCAGTTGCAGCTTCCATTTCACAATGGATATCAATGCTATTACTGGCCTTTTATGTCATGTATGCTAAGAAGTTCAAGCAGACATGGCAAGGCTTTTCAACGCATTCATTCCATTACGTATTCACAAACATTAAACTGGCTCTGCCCTCTGCTGCAATGGTATGTTTGGAGTACTGGGCTTTTGAAGTTTTGGTTTTCTTAAGTGGTCTACTGCCAAACTCACAGATAACAACTTCTTTGGTTGCAATATGTTTAAACACACAATTCATTGCATACACAATCCCTATTGGTCTCGGGGCTGCTGCAAGCACAAGGGTATCCAATGAATTGGGAGCAGGCAACCCGGAAGGAGCTAAACATGCAATGAATGTCACTGTCAAGCTCTCTTTCCTGCTTAGTTTCTGCTTTGCTTTGGCACTTGGATTTGGACATGATATCTGGATTCAGCTTTTCAGTGATAGTTCCAAAATTAAAGATGAGTTTACTTCAGTGACACCCTTGCTTGCCATTTCTATAGTACTAGATGCTGTTCAAGGTGTCATGCAAGGGGCAGCCAGAGGATGTGGCCTGCAACACTCCACTGCATACATTAATCTTTTAACTTTTTATCTTGTTGGCTTACCAATATCATGTCTCCTGGGATTTAAGACCAATTTGCAGTATAAGGGTTTATGGATTGGTCTGATTTGTGGGCTGCTATGTCAAGCTGGAACTCTCTTCCTTTTCTTAAGGCGTGCCAAATGGACTAAACTGGATGTTCTTAGAGACAAAGATAAAGATCATCACAAACTGGCACAAAATTAA 1497 0.4088 MDSIEQMKEEIEKIEESPSSDSTATPLLRVTNDGEENTRWWNGVLDMEEAKHQLLFSLPMILTNIFYYLITSVSVMLVGHLGELQLAGATLANSWFNVTGSAIMVGLSGALETLCGQGFGAKEYQVLGIYLQASCIISLIFSIMVSIIWFYTEPVLVFLHQSQDIARTTALYMKFLIPGLFAYSFLQNILRFLQTQSVVMPLVVLSALPLLVHIGIAYALVQWSGLSFIGSPVAASISQWISMLLLAFYVMYAKKFKQTWQGFSTHSFHYVFTNIKLALPSAAMVCLEYWAFEVLVFLSGLLPNSQITTSLVAICLNTQFIAYTIPIGLGAAASTRVSNELGAGNPEGAKHAMNVTVKLSFLLSFCFALALGFGHDIWIQLFSDSSKIKDEFTSVTPLLAISIVLDAVQGVMQGAARGCGLQHSTAYINLLTFYLVGLPISCLLGFKTNLQYKGLWIGLICGLLCQAGTLFLFLRRAKWTKLDVLRDKDKDHHKLAQN* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2865 498 CDD MATE_eukaryotic 49 481 IPR045069 GO:0042910|GO:1990961
Vra5g2865 498 PANTHER PROTEIN DETOXIFICATION 30 488 - -
Vra5g2865 498 Pfam MatE 59 218 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g2865 498 Pfam MatE 280 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g2865 498 TIGRFAM matE: MATE efflux family protein 59 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g2865 498 MobiDBLite consensus disorder prediction 1 27 - -
Vra5g2865 498 MobiDBLite consensus disorder prediction 1 17 - -
Vra5g2865 498 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2865 Vra-Chr5 36871725 36874520 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2865 K03327 - gmx:100808113 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2865 5 36871725 36874520 Vra5g2865 5 36871725 36874520 ECH