Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2864 ATGGCAGCAAGCAGCAGTTCACATGGCAGAACAAGAGAAGCTCTGTTGGAAGAATCTGACATTAATGGAAGAGAAAACAGAAAATGGTGGAAGAAAGTTTTGGACATGGAAGAAGCCAAACACCAACTCTTGTTTTCGCTTCCAATGATTCTTACAAACTTGTTCTATTACTTAATCACTTTGGTTTCTGTCATGCTTGTTGGTCACTTAGGAGACCTTCAACTTGCTGGTGCTACTCTTGCAAACTCATGGTTCAGTGTAACTGGCGTCGCTCTCATGGTTGGTTTGAGTGGGGCATTGGAAACATTGTGTGGGCAAGGATTTGGTGCAAAGGAATACCATATGCTGGGAATTTACCTACAAGCCTCATGCATCATATCTCTCATTTTTTCCATCATTGTATCCATTATTTGGTTCTATACAGAACCCATCCTGGTGTTGCTTCACCAATCTCATGACATTGCAAGAACAGCTGCTCTTTATATGAGGTTTTTTATCCCAGGATTGTTTGCATATAGCTTCTTGCAAAACATGTTGAGGTTTCTTCAGACACAATCTGTAGTAATGCCATTGGTTCTACTCTCAGCTCTTCCATTGCTTCTTCAAATTGTCATTGCATATGCCTTGGTTCAGAGGTCAGGTCTCAATTTCACAGGTGCACCCGCTGCAGCTTCTATTTCCCTATGGATTTCAATGCTATTACTTGCCTTGTATGTAATCTATGCTAAGAAGTTCAGGCAGACATGGCAAGGATTTTCAATGGATTCATTCAATTACGTACTTACAAACATGAAACTAGCTCTACCTTCTGCTGCAATGGTATGTTTGGAGTATTGGGCTTTTGAAATTTTGGTTTTCTTAGCTGGACTTCTGCCTAACTCCCAGATAACAACTTCTTTGATTGCAATATGTACAAATACAGAATTCGTAGCCTACATGATCACTTACGGTCTCAGTGCAGCTGCAAGCACAAGGGTATCCAATGAATTGGGAGCAGGCAACCCAGAACGAGCTAAACATGCAATGAATGTCACTCTCAAGCTCTCTCTCCTCCTTGGTTTCTGTTTTGTTTTGGCACTTGGATTTGGTCATAATATCTGGATTCAGTTTTACAGTGATAGTGCTACAATCAAAGAGGAGTTTGCATCAGTGACACCTTTGCTTGTCCTTTCCATATTACTAGATGCCATTCAAGGTGTCTTGTCAGGGGTGGCTAGAGGATGTGGCTGGCAGCACTTGGCGGTTTACATTAACCTTGCAACTTTTTATCTCATTGGTCTGCCAATTTCATGTCTCCTAGCATTTAAGACCAATTTGCAGTATAAGGGTTTATGGATTGGTCTGATTTGTGGACTGCTTTGTCAGACCGTGACTCTCTTCCTTTTCACAAGGCGTGCCAAATGGTCTAAATTGGATCTTTCCCACGAAGACAAAGATAAAGACCATCCTCTTCTTATATAA 1461 0.4127 MAASSSSHGRTREALLEESDINGRENRKWWKKVLDMEEAKHQLLFSLPMILTNLFYYLITLVSVMLVGHLGDLQLAGATLANSWFSVTGVALMVGLSGALETLCGQGFGAKEYHMLGIYLQASCIISLIFSIIVSIIWFYTEPILVLLHQSHDIARTAALYMRFFIPGLFAYSFLQNMLRFLQTQSVVMPLVLLSALPLLLQIVIAYALVQRSGLNFTGAPAAASISLWISMLLLALYVIYAKKFRQTWQGFSMDSFNYVLTNMKLALPSAAMVCLEYWAFEILVFLAGLLPNSQITTSLIAICTNTEFVAYMITYGLSAAASTRVSNELGAGNPERAKHAMNVTLKLSLLLGFCFVLALGFGHNIWIQFYSDSATIKEEFASVTPLLVLSILLDAIQGVLSGVARGCGWQHLAVYINLATFYLIGLPISCLLAFKTNLQYKGLWIGLICGLLCQTVTLFLFTRRAKWSKLDLSHEDKDKDHPLLI* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2864 486 Pfam MatE 269 430 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g2864 486 Pfam MatE 48 207 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g2864 486 PANTHER MULTIDRUG RESISTANCE PROTEIN 20 478 - -
Vra5g2864 486 TIGRFAM matE: MATE efflux family protein 48 445 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g2864 486 PANTHER PROTEIN DETOXIFICATION 20 478 - -
Vra5g2864 486 CDD MATE_eukaryotic 38 470 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2864 Vra-Chr5 36856149 36868949 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2864 K03327 - gmx:100816310 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2864 5 36856149 36868949 Vra5g2864 5 36856149 36868949 ECH