Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2826 ATGAGAACCATGTCGAAAGTTGGATGCTTCACTTTGTTTGCTTTTTTAGTGGCATTTCATGTCGATTGCCGTTCTCTTCGACCTAGTTTGTCTGATGGGGTTGATGCTGTTCAACCCCACGAGTCTTATCTGCAACTCATTGAACAAAAGGTTCAACCTTCTTCTGATGGGCATTACTGTAAGCAAATGTACGGGTTCTTGCCGTGTTCCAGTAACATTCTTGGCCATCTTTTCCTTATTTTAGTTTATGAGTACTTGTTGTTCCATGGAGAGTCGTATTTGGCTGCTGGAGGTGAGCAAATCTTCAAGATTCTTGGCCCTGGTGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGGGCAGTTCCCGAGTCCTTAATTCTTGTTGTTACAGGACTTTCCAGTGACAAGGAGATTGCACAAGAGTATGCTTCCACTGGTGTTGGTTTGTTGGCGGGATCATCCATCTTACTTCTAACAGTAGTGTGGGGAACATGTGTTATCATTGGCAAACAAAAGTTGATAAATGATTCTAACTTTGATGGTTCACATTCATCAAGGAGAGGAATAACAAAATCACTAACTGGTTATGGTATCACTATGGATGTAGATACTAGACAGATGGCAATAATCATGGTTTTCTCAGTTATACCACTTGTCATAATGCAGATTCCCCATTTGTTCCACTTCTCTTCTGCAGCAAGCAATGTGACCTTGATGGTTGCTCTTATAGTAGCTGTTACATTTCTTATCTCATACTTCATTTACCAGGTCTTTAAACCTCAGATTGAGAAAACTAGACTGGAGTATATTAAGCATGATGACTTAATATTAAGAATTTTTCAACGTGTTGAGCAACAAACTCTGCAAAAGATTCTGGCTGAGGATGGAACTCCCAATGTGTCTGCAATAAGTGGGTTGTATCATGAAATTAGCCAGCACGGGGGCAAGGACTTGTTAGCTTCTGAAGTTAAAGAACTGTTCTTTGGGAACAAATTGACTGACACAAATATCAAAGAAGAACAGATAGCAGACTTGTTAAAAGTTTTTGATAGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGTTTAACAGAATACATTAACCAAACAAAGCATGCCTTGGATAGACAATACCTTCCAAAACAATCTTTGAACAAAATGTATCAGACTTTTATAAAGCCATGGATTGAACACGTGAGAAAGGAACGTGAGTTGAAGGAACATCTTATATCTGAAGTCTTAAAGCATGCTCAGAATTATATGGTTGGCAGGCTGCAGAATGATGATGGTACACCTGACAAAACTGCAATCAGAAGGCTGTTTGAGGAAATTGATGTCAACAGGGATAACCACATTTCAAGATCTGAACTGGAAAAAGTAGTAAAGGACATCCACTTTAACAAGTTTGTAGATGCTGAGGAGGCAGTTGCAAAACTTGCACAAGATCTTGATGTCAACCGAGATGATGAAATTAGTGAGACCGAGTTTATTGAAGGTTTTGCAAAATGGATGAACTCAAATTCCAGCCAAGCTGCTAAATCAAAATCTTCATCTCAGGGAAATCATCAAACCTGGGAAGATGTTGAAAAGGTAATGGAAGAGAATCCAACCAATGGCGCTTCTGCATGGTTGACGGCTATTGGATATGTGGTGTTGGGGGTTACTATGCTGGCTCTTCTTGCAGAACCTTTAATAGCTAGTGTTCAACAATTCTCTGAAGAAGCAGGAATTTCATCGTTTTTCATCTCATTCATTTTAGTCCCCCTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAGAAGAGCAGCAATACTTCTCAGACAATATACGAGATTTATGGAGCAGTGTTCATGAACAACATTCTGGGCTTTGTGGTGATCTCTATTCTCATATACAGTCGTGAGATAACTTGGCAATTCTCAGCTGATGTACTTGTTGTGGCAATAGTTTGTGCAGTAATGGGCCTCGCTGCTACTTTTCGCCTCACTTTTCCTCTTTGGACATCCTTCCCTGCATACTTCATGTACCTCATAGCATTGCTGTTGGTCTTTCTTCTCAAAGATGTTCTCAATTATGTTTAG 2109 0.3973 MRTMSKVGCFTLFAFLVAFHVDCRSLRPSLSDGVDAVQPHESYLQLIEQKVQPSSDGHYCKQMYGFLPCSSNILGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDILGAVPESLILVVTGLSSDKEIAQEYASTGVGLLAGSSILLLTVVWGTCVIIGKQKLINDSNFDGSHSSRRGITKSLTGYGITMDVDTRQMAIIMVFSVIPLVIMQIPHLFHFSSAASNVTLMVALIVAVTFLISYFIYQVFKPQIEKTRLEYIKHDDLILRIFQRVEQQTLQKILAEDGTPNVSAISGLYHEISQHGGKDLLASEVKELFFGNKLTDTNIKEEQIADLLKVFDRNGDQIITKEEFVTGLTEYINQTKHALDRQYLPKQSLNKMYQTFIKPWIEHVRKERELKEHLISEVLKHAQNYMVGRLQNDDGTPDKTAIRRLFEEIDVNRDNHISRSELEKVVKDIHFNKFVDAEEAVAKLAQDLDVNRDDEISETEFIEGFAKWMNSNSSQAAKSKSSSQGNHQTWEDVEKVMEENPTNGASAWLTAIGYVVLGVTMLALLAEPLIASVQQFSEEAGISSFFISFILVPLATNFREATSAIKEASHKKSSNTSQTIYEIYGAVFMNNILGFVVISILIYSREITWQFSADVLVVAIVCAVMGLAATFRLTFPLWTSFPAYFMYLIALLLVFLLKDVLNYV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2826 702 Gene3D - 297 376 - -
Vra5g2826 702 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 383 - -
Vra5g2826 702 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 390 523 - -
Vra5g2826 702 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 546 701 - -
Vra5g2826 702 Pfam EF-hand domain pair 438 502 IPR002048 GO:0005509
Vra5g2826 702 SMART efh_1 439 467 IPR002048 GO:0005509
Vra5g2826 702 SMART efh_1 341 369 IPR002048 GO:0005509
Vra5g2826 702 SMART efh_1 478 506 IPR002048 GO:0005509
Vra5g2826 702 CDD EFh 440 504 IPR002048 GO:0005509
Vra5g2826 702 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Vra5g2826 702 SUPERFAMILY EF-hand 325 507 IPR011992 -
Vra5g2826 702 ProSiteProfiles EF-hand calcium-binding domain profile. 337 372 IPR002048 GO:0005509
Vra5g2826 702 ProSitePatterns EF-hand calcium-binding domain. 350 362 IPR018247 -
Vra5g2826 702 Gene3D - 377 519 - -
Vra5g2826 702 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Vra5g2826 702 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Vra5g2826 702 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Vra5g2826 702 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 9 383 - -
Vra5g2826 702 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 546 701 - -
Vra5g2826 702 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 390 523 - -
Vra5g2826 702 Pfam Sodium/calcium exchanger protein 92 258 IPR004837 GO:0016021|GO:0055085
Vra5g2826 702 Pfam Sodium/calcium exchanger protein 550 693 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2826 Vra-Chr5 36058093 36062719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2826 390 695 EF-hand Containing Proteins AT1G53210 39.755 4.50e-62 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2826 - - gmx:100799062 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2826 5 36058093 36062719 Vra5g2826 5 36058093 36062719 ECH