Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2825 ATGAGAAACATTTACTCTATATTTCTCCTTTTGTTAGCAACAAGAATTAGGGTTGAAGGTCGATATCTGACAGAACTAGTTTCAGATGGTGTTCACAAAGTTGAACACAACGAAACTTCTTACTTAGTTCTGAAAGGAATTGATGATGAATCCTGCGAGGAGCACTGCAAACAAATGTATGGCTTCTTGCCATGCACAGACAATATTTTTGGCCATCTCTTTCTTATTTTGGTGTATGAGTATTTGCTGTTCCATGGAGAATCATATTTGGCTAAAGGAGGAGAACAAATCTTCAAGATTCTTGGCCCTGGTATCTTTGGTGCTAGTGCTTTTCACATCCTAGCTGCCCTTCCAGAGTCCCTAATTCTTCTTGTTTCAGGACTTGTGAGCAATAGGGAGATAGCAGAAGAATATGGCATGAGTGGGATTGGGTTATTGGCTGGATCATCTATTTTGCTTCTAACTGTAGTTTGGGGAAGCTGTGTCATTGTTGGAAGACAACAATTTCAGCATCATTCTTCTGCTTCTAACTCTCACAACAAAACTGTTAAAGCCTTCTTTACTGGTTACGGCATTACTACGGATTTGGAAACAAGTTACACTGCAAGAATAATGGTTTGCTCTGTGATGCCATTTGCAATCATGCAAATCCCAAATTTATTCAATTTCTCTTCTGAGTTAAGAAACGCCACCTTACTAATTGCTCTCATTATTACCTCCATTTTTCTCTTCTTCTACTTCGTTTACCAGATTTTTGAGCCATGGGTACAGAAAAGAAGACTGGAATATGTGAAACACGATCATTTAATATTGAGAATATTACAAGATGTTCAGAAGAACACCCTGCAGAGGATCTTCACAAGGAATGGGACTCCAAATGTGAGTGCCATAAGGAGGTTATATAGGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAGTGAGAGATCTTCTGCTCAAAAACAAAGTTACTGAAACCAATTTTGATGAGGAGAAAGAAGTAGAACAGGTGTTACAGATTTTTGACCTGGATGGTGACAAAAGAATAAGCAAAGAGGAATTTGTTACTGGCTTCACAAAATGGCTTCGTCAAACACAGCACGCTTTAGAGAAACAGTATTTTTCAAGGAAATCATTGAAAAACATATATCAGGTTTTTGGTCCATGGATTGAAAACAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATGTGAAATCTTGAAGCATGTTCAGAGTGATGTGGTTGGTAGCCTTCTCACAGTAGATGGAAAACCAGATGAACAAGCTATCAGAGGGTTGTTTGTGAAAATTGATCGTAATAGAGACAACTTCATTTCCCAATCTGAGTTAAGAGATCTAATCATGAACATCAAGTTTGTCAAAGCATCAATGGAAGTAGAAGAAGCAGTAGCTCTTGTCATTGAAGAACTTGACATTAATAACGACAGCATAATTAATGAGGAGGAATTTGTTTCTGGGTTTCAGAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCAGTGTCACATTCTGAGTCTCAAGAAGATATGTATCAGAGCTGGGAAGAGGTTGACATGGTGGTAGAAGAGAAGCAAAGCGAAGCAGTAGTTGATAAAACAACATGGGCATGGTTTAAGGCCATTTCATATGTGGTGCTAGGAATTGCTATGCTATCCATTTTGGCAGAGCCTCTAACAGAAAGTGTGCACAACTTCTCTAACAGTGTAGGACTTCATCCATTCTTTATGTCATTTATTCTGGTCCCCTTAGCCACAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGCAAGCCATAAGAAGCCAAGAACCACTTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTGATGAACAACATTCTTGGCTTCTTTGCAATCTCAGTTCTGATCTGTGTGGGACAAGTCACTTGGCAATATTCTGCTGAATTGCTGGTTGTTGCTATTGTTTGTTCTATAGCAGGCTTAACTGCAAGTTTTCGCTCCACTTTTCCTCTATGGTCATCATTTTTCGCAATCCTCTTGTACCCATTGTCCTTGGTTTTGGTTTTTGTACTTGACCAGGTTCTTCATTATAAGTAG 2112 0.3902 MRNIYSIFLLLLATRIRVEGRYLTELVSDGVHKVEHNETSYLVLKGIDDESCEEHCKQMYGFLPCTDNIFGHLFLILVYEYLLFHGESYLAKGGEQIFKILGPGIFGASAFHILAALPESLILLVSGLVSNREIAEEYGMSGIGLLAGSSILLLTVVWGSCVIVGRQQFQHHSSASNSHNKTVKAFFTGYGITTDLETSYTARIMVCSVMPFAIMQIPNLFNFSSELRNATLLIALIITSIFLFFYFVYQIFEPWVQKRRLEYVKHDHLILRILQDVQKNTLQRIFTRNGTPNVSAIRRLYREIDQDGSSGISASEVRDLLLKNKVTETNFDEEKEVEQVLQIFDLDGDKRISKEEFVTGFTKWLRQTQHALEKQYFSRKSLKNIYQVFGPWIENKRKEREGKKQLICEILKHVQSDVVGSLLTVDGKPDEQAIRGLFVKIDRNRDNFISQSELRDLIMNIKFVKASMEVEEAVALVIEELDINNDSIINEEEFVSGFQKWLSSTSAPAPVSHSESQEDMYQSWEEVDMVVEEKQSEAVVDKTTWAWFKAISYVVLGIAMLSILAEPLTESVHNFSNSVGLHPFFMSFILVPLATNAREATSAIKEASHKKPRTTSLAISEIYGGVLMNNILGFFAISVLICVGQVTWQYSAELLVVAIVCSIAGLTASFRSTFPLWSSFFAILLYPLSLVLVFVLDQVLHYK* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2825 703 Gene3D - 361 501 - -
Vra5g2825 703 SUPERFAMILY EF-hand 294 502 IPR011992 -
Vra5g2825 703 ProSitePatterns EF-hand calcium-binding domain. 442 454 IPR018247 -
Vra5g2825 703 SMART efh_1 336 364 IPR002048 GO:0005509
Vra5g2825 703 SMART efh_1 296 324 IPR002048 GO:0005509
Vra5g2825 703 SMART efh_1 473 501 IPR002048 GO:0005509
Vra5g2825 703 SMART efh_1 433 461 IPR002048 GO:0005509
Vra5g2825 703 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 542 701 - -
Vra5g2825 703 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 385 509 - -
Vra5g2825 703 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 5 377 - -
Vra5g2825 703 Pfam EF-hand domain pair 296 360 IPR002048 GO:0005509
Vra5g2825 703 Pfam EF-hand domain pair 432 498 IPR002048 GO:0005509
Vra5g2825 703 Gene3D - 254 360 - -
Vra5g2825 703 CDD EFh 434 499 IPR002048 GO:0005509
Vra5g2825 703 ProSiteProfiles EF-hand calcium-binding domain profile. 292 327 IPR002048 GO:0005509
Vra5g2825 703 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 385 509 - -
Vra5g2825 703 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 542 701 - -
Vra5g2825 703 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 5 377 - -
Vra5g2825 703 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Vra5g2825 703 CDD EFh 297 362 IPR002048 GO:0005509
Vra5g2825 703 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Vra5g2825 703 ProSitePatterns EF-hand calcium-binding domain. 345 357 IPR018247 -
Vra5g2825 703 Gene3D - 535 696 IPR044880 -
Vra5g2825 703 Pfam Sodium/calcium exchanger protein 553 694 IPR004837 GO:0016021|GO:0055085
Vra5g2825 703 ProSiteProfiles EF-hand calcium-binding domain profile. 429 464 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2825 Vra-Chr5 36016802 36022585 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2825 385 697 EF-hand Containing Proteins AT1G53210 40.615 7.54e-68 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2825 - - gmx:100798009 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2825 5 36016802 36022585 Vra5g2825 5 36016802 36022585 ECH